AT4G19130.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Replication factor-A protein 1-related | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Replication factor-A protein 1-related; FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Replication factor-a protein 1 Rpa1 (InterPro:IPR004591), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication factor A, C-terminal (InterPro:IPR013955), Zinc finger, CCHC-type (InterPro:IPR001878), Replication factor-A protein 1, N-terminal (InterPro:IPR007199); BEST Arabidopsis thaliana protein match is: Replication factor-A protein 1-related (TAIR:AT5G45400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:10466618..10469092 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 85996.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.76 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 784 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEVSLTAGAI GKIMNGEVTT EADMIPVLQV TDLKQIMAQQ DPTRERFRMV LSDGTYLHQG MLGTDLNNLV KEGTLQPGSI VRLTRFVGDV IKGRRIVIVP 101: QLEVLKQISD IIGHPVPGGK HNDQRGADSG IKFNTTEQQG SGIRQVNNIE PGRSNAAISP QVGGTGSSVP ASTTPSTRAY SNPSSGNGVT RQDYARDPPT 201: SYPHQPQPPP PMYANRGPVA RNEAPPKIIP VNALSPYSGR WTIKARVTNK AALKQYSNPR GEGKVFNFDL LDADGGEIRV TCFNAVADQF YDQIVVGNLY 301: LISRGSLRPA QKNFNHLRND YEIMLDNAST IKQCYEEDAA IPRHQFHFRT IGDIESMENN CIVDVIGIVS SISPTVTITR KNGTATPKRS LQLKDMSGRS 401: VEVTMWGDFC NAEGQRLQSL CDSGVFPVLA VKAGRISEFN GKTVSTIGSS QLFIDPDFVE AEKLKNWFER EGKSVPCISL SREFSGSGKV DVRKTISQIK 501: DEKLGTSEKP DWITVSATIL YLKFDNFCYT ACPIMNGDRP CSKKVTDNGD GTWRCEKCDK SVDECDYRYI LQLQIQDHTD LTCVTAFQEA GEEIMGISAK 601: DLYYVKNEHK DEEKFEDIIR KVAFTKYNFK LKVKEETFSD EQRVKATVVK VDKLNYSADT RTMLGAMDKL RTRDANSLPI NPEGSDYNAD VVNTGIGSSG 701: TRDPSSVQRR DFGLHAHQSG QSGNHYSGGG ATTSCNVCGN SGHVSAKCPG ATKPQEQGQY MGGSYRGTTG SYGGGLPRQH VGSY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)