AT4G17520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Hyaluronan / mRNA binding family | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Hyaluronan / mRNA binding family; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Stm1, N-terminal (InterPro:IPR019084), Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT5G47210.1); Has 14577 Blast hits to 9436 proteins in 968 species: Archae - 15; Bacteria - 3155; Metazoa - 5443; Fungi - 1433; Plants - 1957; Viruses - 142; Other Eukaryotes - 2432 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:9771496..9773313 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38907.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.25 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.38 | ||||||||||||||||||||||||||||||||||||||||
| Length | 360 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASVNPFDLL DDDAEDPSQI VASKPLKVVA PVQTAKSGKM PTKPPPPSQA VREARNAPGG GRGAGRGGSY GRGGRGGNNR DSRNNDGPAN ENGYGGGYRR 101: SEEGDGARRG GPVGGYRGDR RGSYSNGGDS GDSERPRKNY DRHSRTAYGN EDKRDGAGRA NWGTTQDDIT PVTEESTAVV DKNLTVEKQD GEGEATDAKN 201: ETPAEKAEEK PEDKEMTLEE YEKVLEEKKK ALQATKVEER KVDTKAFEAM QQLSSKKSNN DEVFIKLGTE KDKRITEREE KTRKSLSINE FLKPADGKSY 301: YRPRGGYQGG REGRGPREGN QRDGGRNLRE GGRNQRDGGA AAQAPTPAIG DSAQFPTLGK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)