AT4G16100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF789) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF789); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT5G49220.1); Has 347 Blast hits to 341 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 2; Plants - 319; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:9105809..9107986 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44661.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.61 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||
| Length | 394 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSTTRRIRGE NRFYNPPPMR KLQQEREKKR LEAEEIEKEK KKAKEILDRK IKVEEKEIKQ PEECSTSDCS VPSRVSSTTT TTGTTSSNLG RFLDCTTPIV 101: STQHLPLTSS KGWRTREPEY RPYFLLNDLW DSFEEWSAYG VGVPLLLNGI DSVVQYYVPY LSGIQLYEDP SRACTTRRRV GEESDGDSPR DMSSDGSNDC 201: RELSQNLYRA SLEEKPCIGS SSDESEASSN SPGELVFEYL EGAMPFGREP LTDKISNLSS QFPALRTYRS CDLSPSSWVS VAWYPIYRIP LGQSLQNLDA 301: CFLTFHSLST PCRGTSNEEG QSSSKSVASA KLPLPTFGLA SYKFKLSEWS PESDVDENQR VGTLLRTAEE WLRRLKVILP DFRHFISHSG SAWR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)