AT4G15250.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : B-box type zinc finger protein with CCT domain | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT3G21880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:8709942..8711106 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36621.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.98 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 330 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEARCDFCGT EKALIYCKSD SAKLCLNCDV NVHSANPLSQ RHTRSLLCEK CSLQPTAVHC MNENVSLCQG CQWTASNCTG LGHRLQSLNP YSDCPSPSDF 101: GKIWSSTLEP SVTSLVSPFS DTLLQELDDW NGSSTSVVTQ TQNLKDYSSF FPMESNLPKV IEEECSGLDL CEGINLDDAP LNFNASNDII GCSSLDNTKC 201: YEYEDSFKEE NNIGLPSLLL PTLSGNVVPN MSLSMSNLTG ESNATDYQDC GISPGFLIGD SPWESNVEVS FNPKLRDEAK KRYKQKKSKR MFGKQIRYAS 301: RKARADTRKR VKGRFVKSGE TFEYDPSLVM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)