AT4G15070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.947 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G48320.1); Has 1561 Blast hits to 653 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 1537; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:8603424..8606141 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 102255.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.49 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||
| Length | 889 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSNSNPESK LKSFILQISS FSESWNPYLG FDPEWDSISK MISTITQTIS LVSSIDFDSQ PESKLMSLTN EAVYVFNSMD LDSQPDPLMK LISLISQKVS 101: LVNSTDLISE QDTDSAPDLE IFMLLIQESF SLTPEPELIS LINQIISHVV FRQRQSESMP DLEAELEPEP DSEPESEPEI DLEMNLISLI TQLISQPITL 201: SLKIYLIPQI ISMVSKMDFD LQPETEFVSL TNQAVSLFKS MDLDSQPDPL RNLISLISEE ITHAKSIRVL KRNQDLKLKL GRTTLEPMIL ARHFNPETDS 301: GTKFLWRNSN SSTDSDTKLL ELDSNSDRYV HIKPLEPDSN SDTDLDLYCK TMSLDSYLMS LVGETLRLEP EPKFISLIYQ IFSLVISMNS VWKRLIFLYP 401: QVQVKLEKGK FHVIEEVSWS SKGKWKCLPL DWKRIRITEE GLCHIHCQTC NVDNHGEYEK APVMIKHALH PNHSLQLVLL NGDTTRESCD YAMNIACVEK 501: PRVLSLDQPK WHEHTLTQFP RKTSVTCNVC SLAYSSCPFY ICPPCDFVVH QKCLSLPRVI RISRHFHRIY FTLSFDQGVR CCGVCRRKID NDYGGYSCKK 601: DGCSYVAHSK CATQSNVWDG KELEGEPEED INEIEPFVTL RDGSIRHFSH EHHRLKLDEN TSRDYNENKL CQACITPIYF GNVYSCMQCD FSLHEECAKL 701: SRKTHHPVHP HLLTLVGKSD IMDATKSCSV CPWKCTTGFF YECRERECRF KVHVQCATIY EPLVHESHMD PLFLTSKPGE ERRCCVCKEL GHCSTNETFN 801: CIECDFALCF KCATLPHKVR YKHDKHMLTL SYGEETSTIP NWCEVCEKKI KSKERFYMCD EYCCVTLHIE CMLGVDLLYE AWFILVLPQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)