AT4G12610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RAP74; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity, transcription activator activity, DNA binding, catalytic activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, positive regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: shoot, root, guard cell; CONTAINS InterPro DOMAIN/s: Transcription initiation factor IIF, alpha subunit (InterPro:IPR008851), Transcription Factor IIF, Rap30/Rap74, interaction (InterPro:IPR011039); Has 33758 Blast hits to 21623 proteins in 1111 species: Archae - 118; Bacteria - 4904; Metazoa - 11974; Fungi - 5901; Plants - 2006; Viruses - 435; Other Eukaryotes - 8420 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:7455565..7457465 | ||||||||
| Molecular Weight (calculated) | 43865.70 Da | ||||||||
| IEP (calculated) | 4.40 | ||||||||
| GRAVY (calculated) | -1.36 | ||||||||
| Length | 400 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MQNKEFVAIP AGSWYNFNKV AQYKQLTLEE AEEKMKNRRK TADGYQRWMM KAANNGPALF GEVDNEKESG GTSGGGGRGR KKSSGGDEEE GNVSDRGDED 101: EEEEASRKSR LGLNRKSNDD DDEEGPRGGD LDMDDDDIEK GDDWEHEEIF TDDDEAVGND PEEREDLLAP EIPAPPEIKQ DEDDEENEEE EGGLSKSGKE 201: LKKLLGKANG LDESDEDDDD DSDDEEETNY GTVTNSKQKE AAKEEPVDNA PAKPAPSGPP RGTPPAKPSK GKRKLNDGDS KKPSSSVQKK VKTENDPKSS 301: LKEERANTVS KSNTPTKAVK AEPASAPASS SSAATGPVTE DEIRAVLMEK KQVTTQDLVS RFKARLKTKE DKNAFANILR KISKIQKNAG SQNFVVLREK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)