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AT4G12520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT4G12510.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1NAeggNOG:ENOG410YRRTEMBL:AK227411EMBL:AL049730
EMBL:AL161534EMBL:BT003057EMBL:CP002687EnsemblPlants:AT4G12510.1
EnsemblPlants:AT4G12520EnsemblPlants:AT4G12520.1entrez:826863entrez:826864
GeneID:826863GeneID:826864GO:GO:0005783GO:GO:0009506
Gramene:AT4G12510.1Gramene:AT4G12520.1hmmpanther:PTHR31731HOGENOM:HOG000237797
InterPro:IPR016140InterPro:IPR027923KEGG:ath:AT4G12510KEGG:ath:AT4G12520
OMA:VSACNTCPfam:PF14547Pfscan:PS51257PhylomeDB:Q9S7U3
PIR:T07643Proteomes:UP000006548RefSeq:NP_567391.1RefSeq:NP_567392.1
SMART:SM00499SMR:Q9S7U3SUPFAM:SSF47699TAIR:AT4G12510
TAIR:AT4G12520TMHMM:TMhelixUniGene:At.42949UniGene:At.48851
UniProt:Q9S7U3
Coordinates (TAIR10) chr4:-:7421279..7421668
Molecular Weight (calculated) 13264.80 Da
IEP (calculated) 9.33
GRAVY (calculated) 0.64
Length 129 amino acids
Sequence (TAIR10)
(BLAST)
001: MASKISASLV IFLTFNILFF TLTTACGGGC SSTPKPKPKP KSTGSCPKDT LKLGVCANVL KDLLKIQLGT PPVKPCCSLL NGLVDLEAAA CLCTALKAKV
101: LGINLNVPVS LSLLLNVCGK KVPSGFVCA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)