AT4G10060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.929 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Beta-glucosidase, GBA2 type family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Beta-glucosidase, GBA2 type family protein; FUNCTIONS IN: catalytic activity, glucosylceramidase activity; INVOLVED IN: glucosylceramide catabolic process, sphingolipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucosylceramidase (InterPro:IPR006775), Six-hairpin glycosidase-like (InterPro:IPR008928), Beta-glucosidase, GBA2 type (InterPro:IPR014551); BEST Arabidopsis thaliana protein match is: Beta-glucosidase, GBA2 type family protein (TAIR:AT1G33700.2); Has 794 Blast hits to 727 proteins in 173 species: Archae - 72; Bacteria - 219; Metazoa - 159; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:6289355..6295258 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 104356.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.14 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 922 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEKNGHTESE LQTQMVGNER LPQVTWQRKL NSKVKNPSEF KMSIRDVLHL FPLGYRLWRY TKEEAKKGRF SMYDIFKKRH VRGDHGVPLG GIGGGSIGRS 101: YKGEFQQFKL FPKICEEAPI LTNQFSVFVS RPGGLSYSTV LCPTKPKSVK GKTEDLGIES WDWNMEGDKS TYHALYPRSW TVYNEPDPEL RIVSRQVSPF 201: IPHNYKESSL PVSVFEFTMS NLGKEEATVT LLFTWENSVG GASGLTGEHF NSTIMERDGV HAIVLHHKTG NGHPPVTYAI AAQETEDVHV SECPCFLVSG 301: HSPKEITAKE MWDEIKKNKS FDELNSEPGS PSRPGTSIGA AIAAKVKVPP GCDRTVTFSL SWDCPEVRFN EKTYHRRYTK FYGNLGDAAV KMARDALLNY 401: VDWESQIEAW QSPILSDTTL PDWYRVTLFN ELYYFNSGGT IWTDGLPPKE SIERSKVTNT EQNDIVIDLF QKINAVCEQI YSPQSSNSEE NIGQFIYLEG 501: IEYLMYNTYD VHFYSSFALL SLFPKLALSI QRDFAATVLI QDPTKKKIMS SGEWVTRKLL GSVPHDIGLN DPWLELNEYN FFNTDRWKDL NAKFVLQVYR 601: DVVATNDQSF AKAVWPSVYT AVAYLDQFDK DEDGMIENEG FPDQTYDAWS VTGVSAYCGG LWVAALQAAS AFASIVGENA VAIYFNAKYE KAKIVYEKLW 701: NGSYFNYDDS GSGSSSSILA DQLAGQWYAR ACGLKPITKE EWIKKALETI YEFNVMKVKG GTRGAVNGMS TEGKVDTNSL VSKEVWAGTT YSVAACMIQE 801: GQREKGFQTA SGIYEAIWSD RGLSCSFQTP EAWNMNDEYR SLCYMRPLAI WAIQWALTRT QSFGEEKQKL VAGDEEEESN LLLRQHKGFK DVARFVKIVP 901: TSNVHRSRLQ HTYETVLKTL RL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)