AT4G03200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.993 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : catalytics | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
catalytics; FUNCTIONS IN: catalytic activity; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF255 (InterPro:IPR004879), Thioredoxin fold (InterPro:IPR012335), Six-hairpin glycosidase-like (InterPro:IPR008928), Thioredoxin-like fold (InterPro:IPR012336); Has 2655 Blast hits to 2648 proteins in 674 species: Archae - 139; Bacteria - 1128; Metazoa - 120; Fungi - 75; Plants - 31; Viruses - 0; Other Eukaryotes - 1162 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:1408296..1412566 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 91839.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.29 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||||||||||
| Length | 818 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLMKSLHLLS SSILLHRFAS RSIASLSTLP RRRNIVRIHN PSFSSPFPPI LSRPISSGKV LAMAEESSSS STSSTSQKHT NRLAAEHSPY LLQHAHNPVD 101: WYPWGEEAFE EARKRDVPIF LSIGYSTCHW CHVMEVESFE DEEVAKLLNN SFVSIKVDRE ERPDVDKVYM SFVQALYGGG GWPLSVFLSP DLKPLMGGTY 201: FPPNDNYGRP GFKTLLKKVK DAWNSKRDTL VKSGTYAIEE LSKALSASTG ADKLSDGISR EAVSTCAKQL SRSYDSEFGG FGSAPKFPRP VEIQLMLYHY 301: KKLKESGKTS EADEEKSMVL FSLQGMANGG MHDHIGGGFH RYSVDECWHV PHFEKMLYDQ GQLANVYLDG FSITKDVMYS YVARDILDYL RRDMIAPEGG 401: IFSAEDADSF EFEGAKRKKE GAFYIWTSDE IDEVLGENAD LFKEHYYVKK SGNCDLSSRS DPHNEFAGKN VLIERNETSA MASKFSLSVE KYQEILGECR 501: RKLFDVRLKR PKPHLDDKII VSWNGLVISS FARASKILKA EPESTKYYFP VVNSQPEDYI EVAEKAALFI RGNLYDEQSR RLQHSYRQGP SKAPAFLDDY 601: AFLISGLLDL YENGGGIEWL KWAIKLQETQ DELYLDREGG AYFNTEGQDP SVLLRVKEDH DGAEPSGNSV SAINLVRLAS IVAGEKAESY LNTAHRLLAV 701: FELRLRELAV AVPLMCCSAD MISVPSRKQV VLVGSKSSPE LTNMLSAAHS VYDPNKTVIH IDPSSSDEIE FWEEHNSNVA EMAKKNRNSE KVVALVCQHF 801: TCSPPVFDSS SLTRLLSK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)