AT4G03050.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.795 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | ||||||||||||
| Curator Summary (TAIR10) |
Transcriptional silent in leaf tissues of ecotype Col. The transcribed allele in ecotype Ler encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of hydroxyalkyl glucosinolates among different ecotypes of Arabidopsis. | ||||||||||||
| Computational Description (TAIR10) |
AOP3; FUNCTIONS IN: oxidoreductase activity, iron ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G03070.1); Has 6223 Blast hits to 6097 proteins in 833 species: Archae - 0; Bacteria - 725; Metazoa - 54; Fungi - 398; Plants - 4262; Viruses - 57; Other Eukaryotes - 727 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:1344791..1346127 | ||||||||||||
| Molecular Weight (calculated) | 31421.90 Da | ||||||||||||
| IEP (calculated) | 4.69 | ||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||
| Length | 289 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIQLYAEKLA ELDMMVRRLI LESYGIEYFI DEHLNSTYYR MRLMKYIARP DNDITAAVGA NVDNGANDNA DGDANVNDDG ASIGVKVNVD VGDDVNDNDS 101: VNIGVGVDIN VETNVNGDLD AEANGDATAW VVGAVSGNAS VGAKEANVDA ELGLPSHTDK SLTGIIYQHQ IDGLEVKTKE GKWIRVKPAP NTVIVIAGDA 201: LCALMNGRIP SPYHRVRVTE KKKTRYAAAL FSNPKEGYII DSPKELVDEK HPRAFKPFDF VDLFNFYHTE AGRRAPSTLQ AFCGVSAGK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)