AT4G02760.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.994 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNI-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNI-like superfamily protein; BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT4G02740.1); Has 491 Blast hits to 434 proteins in 99 species: Archae - 0; Bacteria - 4; Metazoa - 330; Fungi - 45; Plants - 97; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:1224336..1227857 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55478.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.84 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||
| Length | 506 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDAPNPKRPC LVPLGTSSIE NPCSLPIAPD FNQSNIDLTI SSFLSLSDLP LFSLPLSIGC SFDRVLDNVI PSIAGTSRDE FDQDRFLDRT LQLASLLYKS 101: TKRCIRKRAT LQNSTSWPLL PELTIKVFSM LDTKSLMQAS ACCTMFNKCA MDRVCYSHID LTTAAEDVDN GVVCVMIHRA GKELRSLKLG SISSSAEPTT 201: SLLTRSCLTP LTFNHGFTGG HLRSLHLYHL RMIDCGSLSP VLSACLNLTD LKIVGLDNPL EQLGLLTRNC RLIEHLFIEI YGAAGLITDS SLLEFAANCP 301: NLSSISLLGF LLNDAILQKL IKGFRRLKHI NLSSSPEISG CFFRGLELCG KDSPLETLIL RDCYILKESE VLLFLNSLLA GDFKYIRLID VSNVDGLVCD 401: GGNRTFEPRF PIEELKKQRS NVTFVAIFES QSSLSSSRFP LEELNKERPG LTFVAEFRSP SPSESDVRSP SPSSSSDSSS SSDSSSSSSS GESSDESGTE 501: EEEDED |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)