AT4G02660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.762 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Beige/BEACH domain ;WD domain, G-beta repeat protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Beige/BEACH domain ;WD domain, G-beta repeat protein; FUNCTIONS IN: binding; INVOLVED IN: signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Beige/BEACH (InterPro:IPR000409), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Armadillo-type fold (InterPro:IPR016024), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Beige/BEACH domain ;WD domain, G-beta repeat protein (TAIR:AT1G03060.1); Has 7684 Blast hits to 5756 proteins in 390 species: Archae - 8; Bacteria - 1306; Metazoa - 3489; Fungi - 1068; Plants - 719; Viruses - 0; Other Eukaryotes - 1094 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:1159927..1173791 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 393347.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.34 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 3527 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKWGTLLKDL KDKVGVAETT ADLIAGEAIS DPTTPPSSSQ ASPSSSFAAL AQHDFNLLSP TSRDKLKLEL DFKRYWEEFR SSSSEQEKEA ALNLSVNTFC 0101: RLVKQHANVD QLVTMLVEPH IFSFVIGRAF VADVEKLKVS SRKRSLDVEK AIEFFSEVTK DGSSHGANLL TAIEVLASGP FDKQSLLDSG ILCCLIHTFN 0201: AFLTYSVASE GEKTVNYEEK VEGSVVNIMK ALASHPSAAQ SLIEDDSLQL LFKMVANGSL MAFSRFKVGL VSFHNIQLHK NAMQILGLLL VNDNGSTASY 0301: IRKHHLIKVL LMAVKDFDPD CGDSAYTVGI VDLLLECVEL SYRPETGGVR LKDDIRNAHG YHFLVQFALI LSSMPKDIVF AFDHSSPHKN RGSNDSKKQP 0401: PLSLKTRQND DSEKQQSLSL NSRQNDEFAL KHFSPALSRL LDVLVTLAQT GPIESSGTST SLLSQTKLTG YSRRQTPSAN NRYDEPCEQG SGKVKDLEAV 0501: QMLQDIFLKA ENKDLQAEVL NRMFKIFTSH LENYRICQEL KTVPLLVLNM GGFPSSLQEL ILKILEYAVT VVNCVPEQEL LSLCFLLQQP IDSELKHTIL 0601: SFFVKLTSFD QQYKKVLGEV GVLEVLQDDL KQHKLLRGPD QYSGVSNHLD RVPSSPSFKQ HLDSQDAIIS SPKLMESGSG KLPIFEVERT ITVGWDCMIS 0701: LLKNSQVNQE AFRSANGVTV ILPFLIADEH RTSILRIFSC LITGDIKQVH HEELEALIDV LKSGMVTRVS GDQYKLHYEV RCDIMGALWR IVGVNGSAQR 0801: VFGEATGFSL LLTTLHTFQG EEECRDESHL MVYIKLFKHL LRLITTAVCE NAINRMKLHS VITSQTFYDL LVESGLLCVD LERHVIQLLL ELALEVLVPP 0901: FLTSESMASA EMAECEKASF LVKTASGQFN PDKQKIYNAG AVRVLIRSLL LCTPKLQLEF LNLLERLARA SPFNKETLTS AGCVELLLEI IYPFLQGSSP 1001: FLSHALKIVE VLGAYRLSPS ELKMLCRYVM QMRVMNSGPS LIGMMEKLIL MEEDTGLECV SLAPFVEMDM SKTGHASVQV SLGERSWPPA AGYSFVCWVQ 1101: FRNFLTTQEL ESEVYKAGGS SKTPILSGQQ SEQNIFRIFS VNAISNGSPS YAELYFQEDG ILTLATSNSN SLSFSGLETE EGKWHHLAVV HSKPNALAGL 1201: FQASVAYVYI DGKLRHMGKL GYSPSPVGKS LQVIIGTSAT CARACGGDSM AILDLLDTDM SSGIQKFEDS NRQGDSKAHC SGIVWDLDRL GNLSIQLPGK 1301: KLIFAFDGTC SEFMRATGSF SLVNLVDPLS AAASLIGGIP RFGRLVGNVS LCRQNVIGNS IRPVGGMAVV LALVEAAESR DMLHMALSLL ACALHQNSQN 1401: VKDMETYTGY HLLALFLRPK MALFDMQCLE IFFQISACEA FFSEPKKLES GQTTISMSPT EIIPENNYED PTLCKFQYET SSVGSHGDMD DFSGRKDSFS 1501: HLSELEMGDN PVETSNCIVL SNADMVEHVL LDWTLWVTAP VSIQIASLGF LENLISILWY RSHNLAILRQ INLVKHLLVT LQRGDVEVLV LEKLVILLRC 1601: ILENGFLTPE LEDVVRFAIM TFNPPEIKSQ NSSMRESMGK HVIVRNLVLE MLIDLQVTIK AEELLEQWHK TVSSKLITYF LDGAVHPSSM RWIMTLLGVC 1701: LTSSPNFSLK FFASGGYQGL VRVLQSFYDS PDIYYILFCL IFGKPVYPRL PEVRMLDFHA LMPDDGSHVE LNFVDLLDSV VAMAKSTFDR LIMQSMLAHQ 1801: SGNLSQVSAR CVAELVEGYA DMTGELQGKA LMHKTYAARL MGGEASAPAT ATSVIRFMVD LAKMCPQFSA ACKNTEFLQK CADLYFSCVR AFHAVKLAKQ 1901: LSMKAEEQNI TGGDDSSVEG NFCRVSHQDM STKTSISAGS FPQDQTSSVI SVDMYIPSDY VAVDKVENFL TTPPGESNKS FQGREYIAKQ DGDHVGSVSA 2001: SSEMKSLDLT GSSSQVQPID SRSSESFSML ESPLLSEKSS LEVPFIPSPS KSSTISTPHP SHISVSEFDA SSDQSSGSQG SSAVHTLFTI SPKVLLETDE 2101: SGYGGGPCSA GASAVLDFMA EVCADIMTEQ IKAVQALESI LEMLPLYVDP ECVVVFQGLC LSRVMNYLER RFLRDDEEDD KKLDKRKWSA NLDAFCWMIV 2201: DRVYMGAFPQ PTGVLRTLEF LLSILQLANK DGRVEEVTSS GKGLLSIGRA TRQLDAYVHS ILKNTNRTIL YCFLPSFLIT IGEEDLPSRL GLLVESTKKQ 2301: TSKLSGKESG IDVSAVLQLL VANKNIILCP SNLDTDLNCC LCVNLISLLH DQRKNVQNMA SNIIKYLLVH RKSALEDLLV KKPHRGQKFD VLHGGFDRLL 2401: TGNLPEFSKW LESSEQIITK VLEQGAAVMW IQYIAGSAKF PDVRMKGMDG RRTREMGRKL RDTSKLDLKH WEQVNERRYA LEVVRDAMSA ELRVVRQNKY 2501: GLILHAESVW PTHLQQLVHE RGIFPMRISH GVEDLKWQLC PIEGPYRMRK KLERCKLKID SLHNLLEGKL ELGEIELLKS KSEDGLVISD MDSEPAFLLS 2601: ELYSESFSEE ADDLKDVPSA RNGWNNDRAT STNAASLHNS LSFGGKSSST AVSVPISVNT DEKSETGSPI KSSSGKMDEI KHVEEESEKE LKDDGEYLIR 2701: PYLEHLEKIR FRYNCERVVG LDKHDGIFLI GELCLYVIEN FYIDDHGCIC EKECEDELSI IDQAQGLKKQ FHGSLESKSK SSTLWSTTIK IGAVGGRAWA 2801: YGGGAWGKEK VRVTGNLPHP WHMWKLDSVH EILKRDYELR RVAVEIFSMD GCNDLLVFHK KEREEVFRNL LAMNLPRNSM LDTTISGSAK QESKEGSRLF 2901: KLMAKSFTKR WQNGEISNFQ YLMHLNTLAG RGYSDLTQYP VFPWILADYD GESLDLSDPN NFRKLDKPMG CQTPEGEEEF RKRYESWDDP EVPQFHYGSH 3001: YSSAGIVLFY LIRLPPFSAE NQKLQGGQFD HADRLFNSIR ETWLSAAGKG NTSDVKELIP EFFYMPEFLE NRFNLDLGEK QSGDKVGDVI LPPWARGSVR 3101: EFIRKHREAL ESDYVSENLH HWIDLIFGHK QRGKAAENAV NVFYHYTYEG NVDVDAVTDP AMKASILAQI NHFGQTPKQL FQKPHVKRRT DRKVPPHPLK 3201: HSMHLVPRNI RKCSSSINQI ITFNDKLLLT GANCLLKPRG YKKYIRWGFP DRTLRFMSYD QDKLLSTHEN LHEGNQIQCA GVSHDGRIVV TGAEDGLVSV 3301: WRVSKDGPRG SRRLRLEKSL CAHTAKVICL RVSQPYMMIA SSSDDCTVII WDLSSLSFVR QLPNFSVPVT VVYINDLTGE IVTAAGSVLA VWSINGDCLS 3401: VVNTSQLPTD LIVSVAGSTF SDWLETTWYV TGHQSGALKV WRMVHCTDPV SVPSKTPSNR TGGLNLGNQK PEYKLLLHKE LKFHKQPVTS LHLTTDLKQL 3501: LSGDSAGHLL SWTVPDEILK ASLKKAS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)