AT4G01030.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pentatricopeptide (PPR) repeat-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G20230.1); Has 44944 Blast hits to 14972 proteins in 296 species: Archae - 1; Bacteria - 32; Metazoa - 191; Fungi - 174; Plants - 43677; Viruses - 0; Other Eukaryotes - 869 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:448336..450642 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 86335.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.24 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 768 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYRFLGLTIH GGLIKRGLDN SDTRVVSASM GFYGRCVSLG FANKLFDEMP KRDDLAWNEI VMVNLRSGNW EKAVELFREM QFSGAKAYDS TMVKLLQVCS 101: NKEGFAEGRQ IHGYVLRLGL ESNVSMCNSL IVMYSRNGKL ELSRKVFNSM KDRNLSSWNS ILSSYTKLGY VDDAIGLLDE MEICGLKPDI VTWNSLLSGY 201: ASKGLSKDAI AVLKRMQIAG LKPSTSSISS LLQAVAEPGH LKLGKAIHGY ILRNQLWYDV YVETTLIDMY IKTGYLPYAR MVFDMMDAKN IVAWNSLVSG 301: LSYACLLKDA EALMIRMEKE GIKPDAITWN SLASGYATLG KPEKALDVIG KMKEKGVAPN VVSWTAIFSG CSKNGNFRNA LKVFIKMQEE GVGPNAATMS 401: TLLKILGCLS LLHSGKEVHG FCLRKNLICD AYVATALVDM YGKSGDLQSA IEIFWGIKNK SLASWNCMLM GYAMFGRGEE GIAAFSVMLE AGMEPDAITF 501: TSVLSVCKNS GLVQEGWKYF DLMRSRYGII PTIEHCSCMV DLLGRSGYLD EAWDFIQTMS LKPDATIWGA FLSSCKIHRD LELAEIAWKR LQVLEPHNSA 601: NYMMMINLYS NLNRWEDVER IRNLMRNNRV RVQDLWSWIQ IDQTVHIFYA EGKTHPDEGD IYFELYKLVS EMKKSGYVPD TSCIHQDISD SEKEKLLMGH 701: TEKLAMTYGL IKKKGLAPIR VVKNTNICSD SHTVAKYMSV LRNREIVLQE GARVHHFRDG KCSCNDSW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)