AT3G63180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TIC-like | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TIC-like (TKL); BEST Arabidopsis thaliana protein match is: time for coffee (TAIR:AT3G22380.2); Has 2025 Blast hits to 1341 proteins in 246 species: Archae - 0; Bacteria - 158; Metazoa - 691; Fungi - 375; Plants - 123; Viruses - 3; Other Eukaryotes - 675 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:23336318..23340161 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 105632.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.34 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.78 | ||||||||||||||||||||||||||||
| Length | 978 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDKPREARRS TTNMAASNGV TKRRQRISEN SREQMHQEVA TVRDRPGKKE RDPESFNRSK RRRSERFAPR NERDVEEDSS DESQGDDDYH QRKSFSSGRI 101: PRHAASLMVA DEMIGVPVPR KARSACLKRS HDCRTSSGSH SCEVVSPSSS TLSVKERKIV NGSKSRIPKP PKSSGTVEDD LEIEIAEVLS GLKKQPHSSK 201: RGDDSENSQK SSEVKGIKQL PAGVEICGLF TCKARFDSAN IDKSTNGAKT SLVVASDIVD EKEPRVSEGP QLENNKDESH CISKLDIHLM VPPTLPSSSG 301: RVSLLPLVSD YCKRDSALKS KEKITVKNEM NPEEVKQKKV DKRYWLNLDI EGPNQETDRD SNLRLQNLDW SQPQQAKSAP HSSVLPLPVA VASWPSGVPP 401: QGHVALIQTG KPVDESNGSS KLVQGAPISA SQPRPKRCAT HFFIARNIQL HQHFLKTNHL PTPNKGSVYL KGGDLRPTAG NPSLHGSSPI LSLNSQPHVR 501: NGDNISAPNV KASESGHFAS TRQNKPQPPP ASISVVPAPA FIYPANHHLQ PVMVPSKSSR PTKSPHLAVG LASANFSHPS SSASEVSSPY LTVIPNNAYS 601: FQLSSTIRGG TPSQAVPFYN GSFYSPQMFQ QPPQPLQRQS QAQRESKASS CSSSSHRQPQ VSVNSLSSQA NVQQHRQMSQ KFEVAGVNTD SRGSHTQKGG 701: PFGQIMAAPV QPQNFSMSFA SIASSAPPAT LNFSSNGYHI STPPGVAHQK NHQSSEAKTG GGSCSSNAED PKKNLQGKPQ GMMNGHTLVF DNPSRTLNFV 801: SGTWPPPAAT AINGDPSVFT QHLTQRQQQS GRSKMMMTHS QADSVSATSS QWKNPATSSS LTSCTSLNLK QFQSQQQIRT HGQTQISFAA PTNPQPSQGK 901: QGRSGGSSPS VTGSASHGKP ANSKVSNSKA LLLSPVPLSQ EHTENPASGS TQKNSPVCGR TVPPIITSCP GHLSELKY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)