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AT3G62610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : myb domain protein 11
Curator
Summary (TAIR10)
Member of the R2R3 factor gene family.
Computational
Description (TAIR10)
myb domain protein 11 (MYB11); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 12 (TAIR:AT2G47460.1); Has 8738 Blast hits to 8112 proteins in 470 species: Archae - 0; Bacteria - 0; Metazoa - 742; Fungi - 445; Plants - 5931; Viruses - 3; Other Eukaryotes - 1617 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AL162651EMBL:CP002686
EnsemblPlants:AT3G62610EnsemblPlants:AT3G62610.1entrez:825435Gene3D:1.10.10.60
GeneID:825435GO:GO:0003677GO:GO:0003700GO:GO:0006355
GO:GO:0051555Gramene:AT3G62610.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF203
InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT3G62610
KO:K09422OMA:DDIFDSCPfam:PF00249Pfscan:PS51294
PhylomeDB:Q9LZK4PIR:T48050PROSITE:PS51294Proteomes:UP000006548
RefSeq:NP_191820.1SMART:SM00717SMR:Q9LZK4STRING:3702.AT3G62610.1
SUPFAM:SSF46689TAIR:AT3G62610tair10-symbols:ATMYB11tair10-symbols:MYB11
tair10-symbols:PFG2UniGene:At.47205UniProt:Q9LZK4
Coordinates (TAIR10) chr3:+:23154758..23156371
Molecular Weight (calculated) 38315.50 Da
IEP (calculated) 4.92
GRAVY (calculated) -0.80
Length 343 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRAPCCEKV GIKKGRWTAE EDRTLSDYIQ SNGEGSWRSL PKNAGLKRCG KSCRLRWINY LRSDIKRGNI TPEEEDVIVK LHSTLGTRWS TIASNLPGRT
101: DNEIKNYWNS HLSRKLHGYF RKPTVANTVE NAPPPPKRRP GRTSRSAMKP KFILNPKNHK TPNSFKANKS DIVLPTTTIE NGEGDKEDAL MVLSSSSLSG
201: AEEPGLGPCG YGDDGDCNPS INGDDGALCL NDDIFDSCFL LDDSHAVHVS SCESNNVKNS EPYGGMSVGH KNIETMADDF VDWDFVWREG QTLWDEKEDL
301: DSVLSRLLDG EEMESEIRQR DSNDFGEPLD IDEENKMAAW LLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)