AT3G62570.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.979 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: heat shock protein binding, binding; INVOLVED IN: protein folding; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G47440.1); Has 338 Blast hits to 328 proteins in 106 species: Archae - 0; Bacteria - 6; Metazoa - 96; Fungi - 65; Plants - 144; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:23142616..23144563 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61966.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.32 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||||||
| Length | 552 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAIYSVHNGD KKHWWFTHKK IVDKYIKDAR SLMESEEQND VASAIHLLDA ALSISPRSET ALELKARSLL FLRRFKDVVD MLQDYIPSLK LAVNEEDGSY 101: SYEGSSYSSS SSQLSRKLLS DSSPRRDSSF KCFSVSYLKK KIMAGICKNR DQDKQWRYVV LGQACCHLGL MEDALVLLQT GKRLATVEFR RLSVSLSDDS 201: VSLLLSESSS SSSSSSYAFP PRKVSECETV TNLLAHTKNL LRRRSAGFAA FDAGLFADSI RHFSKILDGR RRPAPQGFLA DCYMHRAAAY KSAGKIAEAI 301: ADCNKTLALE PSCIHALETR ATLLETVRCL PDSLHDLEHL KILYNTILRD RKLPGPPWKR HNVKYREIPG KLCELTTKSK KLKAKMANGE IGNVDYYGLV 401: GVRRGCTRSE LDRANLLLCL RHKPDKALAF MERCDFFDQS EISSVKDRAK MSSLLLYRLI QRGYTALAAA IAEEEQRKKM MVLTQMSTKT VEEHEPVEKS 501: GSITLTDFAE IKPGNSNAYQ GVFCRDLAAV GSLLSRTGFN QPIPMKYDAI SC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)