AT3G62200.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Putative endonuclease or glycosyl hydrolase | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain (TAIR:AT5G61190.1); Has 3997 Blast hits to 3396 proteins in 338 species: Archae - 0; Bacteria - 122; Metazoa - 1660; Fungi - 937; Plants - 691; Viruses - 43; Other Eukaryotes - 544 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:23023437..23025671 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74190.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.32 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.66 | ||||||||||||||||||||||||||||||||||||
| Length | 673 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSTNSASDGD FGTNSVPAEM AEAQYVRAKT SVWWDIENCQ VPNGLDAHGI AQNITSALQK MNYCGPVSIS AYGDTNRIPL TIQHALNSTG IALNHVPAGV 101: KDASDKKILV DMLFWALDNP APANFMLISG DRDFSNALHG LRMRRYNVLL AQPLKASVPL VHAAKTVWLW TSLSAGGIPL TRAESLQLVA NQTTPKPGSE 201: IPSSQPLDSN SDSRRVFDNK SKVKYVPKPS NHQPNNNYRQ QQQNTQGKQF KKAPHEFFGT SEPSVSTSRP PPPNLPSSNV NTFPGNVMTN PQNQNQYTYP 301: PRPGPFPPRQ PYPNTDPSWN NGNSIPNHAQ NYYPNAARPG AATMRPPYGN VFRPYRPENL NPPVGNGFRP MQHPRNDGPR FPSPPLLTPL DISNLSVSQY 401: PSQTQNRPNF NPQVRQEFRP KMESSYTHNG PNKSYIPRCS SAPVTQSTTT TAHTYPSSPG VPPSQPPMVT GSGSSNDRWG TQECPPPSEY VQGLIGVILH 501: ALHILKTEKV MPTEPNISDC IQYGDPKHHG TDVKKALESA LEHHMIMMTN VGKLKLYIGK NEALWNCVNP LGANAKQYPK ETWDRIQQFL TSSSGRVEFT 601: ATTCRYEAAQ VLKKECLKEF TLGDILQILN ITATTKKWIT HHQTGWKPIT ISLAAETTNE TATEADPGIQ TVA |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)