AT3G57140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.750 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : sugar-dependent 1-like | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
sugar-dependent 1-like (SDP1-LIKE); FUNCTIONS IN: GTP binding; INVOLVED IN: metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Protein of unknown function DUF3336 (InterPro:IPR021771), ARF/SAR superfamily (InterPro:IPR006689), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: Patatin-like phospholipase family protein (TAIR:AT5G04040.1); Has 1079 Blast hits to 1061 proteins in 366 species: Archae - 0; Bacteria - 487; Metazoa - 11; Fungi - 361; Plants - 73; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:21150742..21153315 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 89938.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.81 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 801 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDISNEAGVD AFSIIGPTTI IGRTIAVRIL FCNSVSIFRH KVFRILKFFL RGGRVLLSPF VSLLHPRNPQ GILVMVTTMA FLLNRYTSLK AKAEMAYRRK 101: FWRNMMRAAL TYEEWSHAAK MLDKETPKVN ETDLFDVELV SNKLDELKHR RHEGSLRDII FCMRADLVRN LGNMCNPELH KGRLHVPRLI KEYIDEVSTQ 201: LRMVCDMDTE ELSLEEKLSF MHETRHAYGR TALLLSGGAS LGAFHLGVVK TLVEHKLLPR IIAGSSVGSV MCAVVGTRSW PELQSFFEGS WHALQFFDQM 301: GGIFTTVKRV MTQGAVHEIR HLQWKLRNLT NNLTFQEAYD ITGRILGITV CSLRKHEPPR CLNYLTSPHV VIWSAVTASC AFPGLFEAQE LMAKDRTGEI 401: VPYHPPFNLD PEEGSASVRR WRDGSLEMDL PMIQLKELFN VNHFIVSQAN PHIAPFLRMK EFVRACGGRF AAKLAQLAEM EVKHRCNQVL ELGLPLREVA 501: SLFAQEWEGD VTIVMPATFS QYLKIIQNPS NVEIQKAANQ GRRCTWEKLA VIKANFGIEL ALDECVTVLN HMRRLKRSAE RAAAFSAISS SPPSKHLLAG 601: TNRFNASKRI PSWNCIARQN SSGSVDDDVL AEASRLYQHI VVGSGRNSNR TSNLSHTYDA GSECDSPEAE DWTRSGGPLM RTNSAQMFTD YVQNLDAVDP 701: EQIRASENDS IVAASSSSHS ITVTEGDYLQ TGRTHNGFVL NLVRGENLRM NSEPEDSQNE SEIPETPESV QLDSPEKDII DGESSASEDG DAQANLIHDH 801: E |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)