AT3G56840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.887 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FAD-dependent oxidoreductase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FAD-dependent oxidoreductase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076); Has 4748 Blast hits to 4741 proteins in 1463 species: Archae - 76; Bacteria - 3210; Metazoa - 112; Fungi - 136; Plants - 47; Viruses - 1; Other Eukaryotes - 1166 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:21044317..21046177 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53528.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.08 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||
| Length | 483 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKHKPETAAF SLIRPLEAWA ANANKACNTK KMLPCLGRKW MRLSTRNLKP TWNLINVVDA SKTIVRGISG GAETIAKERV DTVVIGAGVV GLAVARELSL 101: RGREVLILDA ASSFGTVTSS RNSEVVHAGI YYPPNSLKAK FCVRGRELLY KYCSEYEIPH KKIGKLIVAT GSSEIPKLDL LMHLGTQNRV SGLRMLEGFE 201: AMRMEPQLRC VKALLSPESG ILDTHSFMLS LVEKSFDFMV YRDNNNLRLQ GEAQNNHATF SYNTVVLNGR VEEKKMHLYV ADTRFSESRC EAEAQLELIP 301: NLVVNSAGLG AQALAKRLHG LDHRFVPSSH YARGCYFTLS GIKAPPFNKL VYPIPEEGGL GVHVTVDLNG LVKFGPDVEW IECTDDTSSF LNKFDYRVNP 401: QRSEKFYPEI RKYYPDLKDG SLEPGYSGIR PKLSGPKQSP ADFVIQGEET HGVPGLVNLF GIESPGLTSS LAIAEHIANK FLR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)