AT3G55060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39300.2); Has 61765 Blast hits to 33720 proteins in 2065 species: Archae - 846; Bacteria - 6964; Metazoa - 31967; Fungi - 5247; Plants - 3104; Viruses - 205; Other Eukaryotes - 13432 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:20403189..20406222 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 102880.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.85 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.90 | ||||||||||||||||||||||||
| Length | 896 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKKLFFFRSS GNGNDKQVNC EKEADSKMRT QASSQAEQEF DSPKSHGQVS GGLALRRSLS WSSAGFLFDK FGETSKNELT TSATKSKDRR RNHSSRCFTP 101: ERQVRERQCK ADKFQHDSSG SSSSCSSNVS SKVLDRYIDG EEHLEPCKQK SNSSHSGVSE SINRRRLPPR VQWTVPTSPS DTFDEKRKSQ SFREAKGTHL 201: RYSSADCVDN GLRHGSPRSV ARNVIERLSQ THGKSKGSNH EPITIQDVYG GSLNRTFDSS SDIAANVSLA EHYEPVNEYY TQDYGGHQQN CIRSRNVYKC 301: MEDDLDSELE MKIKEAEKRA KLFSAELEQQ RCLSDCDFDV SSLVGAIRKL EDERLHLAFE NVNLLRSQIV ERASAREEIR WLKSDWDLHI QRLEKEKSEL 401: QAGLEKELDR RSGEWTSKLE KFQLEEKKLR ERVRELAEHN VSLQRELSAF HENETENKDM ITHLERRVAE LTTTADKLHE ENNYVKQTLS KLQESYAGAT 501: EDLDFLRRNF EEKDQECREL HKSVTKFFRT CKEQGKTIEG LRDGVSEEVK KQPSEKLDQL VKKLQVEQVR LTGIELSLRR EVESMKLETD SLRHENICLL 601: NRLKGNGQEI DITTLKLENE LKMRVCYLQE QGLSMLNESS QLCYKLLKFI KGKLTQLPET YQDKNSVKDG LSEQFMIESE MKVHGIRRGT ENLKRSLQTV 701: TSVVASNSES SSSNTGRPRE QRNQSVEENL RAELSAETLI TSLVREKLYS KEKEIEQLQA ELAAAVRGNE ILRCEVQSSL DNLSVTTHEL KDLKHQMLKK 801: EESIRRLESN LQEAAKEMAR LNALLSKVSN ERGQIWSEYK QYGEKNMLLN SENETLKGMV EKLEEKVLEK EGEITILQDT IGSKHLNLLS SPDFLV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)