AT3G54830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.983 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transmembrane amino acid transporter family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G39130.1); Has 4642 Blast hits to 4638 proteins in 371 species: Archae - 12; Bacteria - 272; Metazoa - 1629; Fungi - 958; Plants - 1130; Viruses - 3; Other Eukaryotes - 638 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:20311901..20315030 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59739.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.48 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.20 | ||||||||||||||||||||||||||||
| Length | 546 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNHSTSDQSL YIESDDGDDE RKHLSDDEDD DGTLSDTSDA YNQNQHHLSK ASPYSTAWPK SYRQSIDMFG SVPSPNLGFL ANSSMSRRGS SFMSSTLTRR 101: HTPESLPCVT KPLLEDEEAP KHKLSTHSLL PSKPSSSMVV SHDMGISNDS SFGQAVLNGV NVLCGVGILS TPYAVKEGGW LGLIILFAFG ILCFYTGLLL 201: RYCLDSHPDV QTYPDIGHAA FGSTGRILVS VILYMELYAM SVEYIILEGD NLSSMFPNAS LSIGGFHLDA PRLFALLTTL AVLPTVWLRD LSVLSYISAG 301: GVIASVLVVL CLFWVGLVDD VGIHSKGTPL NLATLPVSVG LYGYCYSGHG VFPNIYTSMA KPSQFSAVLL ASFGICTLMY AGVAVMGYSM FGESTESQFT 401: LNLPQDLVAS KIALWTTVVN PFTKYPLSRN IQRLFIYLFA MSLEELIPSN YGKSRFYAIA IRSALAISTL LVGLAIPFFG LVMSLIGSFL TMLIFLDTDA 501: DTTASLFLEH LKEKSNPYSG DNLYLNYDSR SSMFSHWHIF SPCKDH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)