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AT3G54000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022260 (InterPro:IPR016802); Has 94 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:824567eggNOG:ENOG410IQY1eggNOG:ENOG410ZDTKEMBL:BT003892
EMBL:BT005115EMBL:CP002686EnsemblPlants:AT3G54000EnsemblPlants:AT3G54000.1
entrez:824567ExpressionAtlas:Q84JE0GeneID:824567Gramene:AT3G54000.1
hmmpanther:PTHR33356hmmpanther:PTHR33356:SF5InterPro:IPR016802KEGG:ath:AT3G54000
OMA:MSINDEPPhylomeDB:Q84JE0PIRSF:PIRSF022260Proteomes:UP000006548
RefSeq:NP_566992.1TAIR:AT3G54000UniGene:At.21821UniProt:Q84JE0
Coordinates (TAIR10) chr3:+:19996757..19998197
Molecular Weight (calculated) 39185.80 Da
IEP (calculated) 8.14
GRAVY (calculated) -0.67
Length 352 amino acids
Sequence (TAIR10)
(BLAST)
001: MEPPSSVVDD AEFWLPTEFL TDDDFLVEKE NNSVGIDDSL FPYEPRHGFG TFGSTVKPNT VKEDDEESFL AGLTRQMVMS SLKDDFSGGV CGNHAFPAGN
101: DHKAWEMNRS PPCVAGTGCC CLNQRFNQNL NSRVSSWDLY CAAERMSIND EPYHSGRGLL GSPAKLSATV KNHSNNGTGY YNNHQSLQYQ KLQAIQFQQL
201: KQQQLMKHRR QLVRQNRGVR VNGNKNVGPV DLSSSAWSNQ FPRRDVMRAV FIGDHTGKRG STGTGVFLPR SVNHTSRTET REKPTISTVL VPARLAQVLN
301: LNLGEPVRST ATLNDVSWRQ RSNNGGFSSQ MVGGVRAEQS VQEPRLPSEW AY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)