AT3G52390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 0.953 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TatD related DNase | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TatD related DNase; FUNCTIONS IN: endodeoxyribonuclease activity, producing 5'-phosphomonoesters, deoxyribonuclease activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Deoxyribonuclease, TatD Mg-dependent (InterPro:IPR012278), Deoxyribonuclease, TatD (InterPro:IPR015992), Deoxyribonuclease, TatD-related, conserved site (InterPro:IPR018228), Deoxyribonuclease, TatD-related (InterPro:IPR001130); BEST Arabidopsis thaliana protein match is: TatD related DNase (TAIR:AT3G03500.1); Has 9584 Blast hits to 9559 proteins in 2684 species: Archae - 131; Bacteria - 6791; Metazoa - 296; Fungi - 190; Plants - 99; Viruses - 0; Other Eukaryotes - 2077 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:19423105..19425183 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35694.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.35 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||
| Length | 320 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASLKMIDIA VNFTDGMFKG LYHGKNCHVP DIATVLNRAW SAGVDRIIVT GGSLEESREA LAIAETDGRL FCTVGVHPTR CNEFEESGDP EKHYQALFSL 101: AKEGMQKGKV VAIGECGLDY DRLQFCSVDI QKKYFEKQFE LAYATKLPMF LHMRAAAEDF CEIVERNKNR FTGGVAHSFT GSASDRDKLL SFDKMYLGVN 201: GCSLKTAENL EVMKGIPVER MMIETDSPYC DIKNTHAGIK FVKSTWPSKK KEKYDQESLV KGRNEPCLVR QVLEVVAGYK GLGDLNQVSS TLYHNTCRVF 301: FPQDLDSAAD ALLSGHHETD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)