AT3G47870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : LOB domain-containing protein 27 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Required for normal cell division during pollen development. Mutant has extra cell in pollen of vegetative cell identity. Male gametophytic mutation. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
LOB domain-containing protein 27 (LBD27); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen development; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 22 (TAIR:AT3G13850.1); Has 2313 Blast hits to 1889 proteins in 56 species: Archae - 0; Bacteria - 4; Metazoa - 46; Fungi - 29; Plants - 845; Viruses - 0; Other Eukaryotes - 1389 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:17660021..17661007 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37335.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.72 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.72 | ||||||||||||||||||||||||||||||||||||||||
| Length | 328 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSNTKHIHKG LQERLLDLLL IALIVYMTLK GGTSGACAAC KYQRRRCAAD CPLAPYFPAE QPKLFQNVHR LFGVRSIVKI LEKLDETQKP EAMKSIIFQS 101: YVRDRSPVHG CLGVTQQLQY MIWFAEEELK AVNSQLQLYR SQPQNGQNQN QNHNHNQMIH ELGSDHNKQQ EDVTSQQLDL GMGLNVNNNQ SNVVTPFFSS 201: LLPVSETQQP QMSYTYSCSE VNNNGYSPPA YNTDSGKEIL TNNNNVWGDQ NRFLYNNNNG GGYSNQNESC HEMKSNGVMA IQSQLVNLQM VSNHQRVEEE 301: EADHEYDELH QFLDIIDDRQ SFGDSKEA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)