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AT3G46610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G14350.1); Has 35826 Blast hits to 11282 proteins in 257 species: Archae - 3; Bacteria - 23; Metazoa - 290; Fungi - 374; Plants - 33823; Viruses - 0; Other Eukaryotes - 1313 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL133314EMBL:BX825001
EMBL:CP002686EnsemblPlants:AT3G46610EnsemblPlants:AT3G46610.1entrez:823814
GeneID:823814Genevisible:Q9SNB7Gramene:AT3G46610.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF641HOGENOM:HOG000244055InParanoid:Q9SNB7InterPro:IPR002885
KEGG:ath:AT3G46610OMA:YELIMSHPaxDb:Q9SNB7Pfam:PF01535
Pfam:PF13041Pfam:PF13812Pfam:Q9SNB7Pfscan:PS51375
PhylomeDB:Q9SNB7PIR:T45598PRIDE:Q9SNB7PRO:PR:Q9SNB7
PROSITE:PS51375ProteinModelPortal:Q9SNB7Proteomes:UP000006548RefSeq:NP_190245.1
SMR:Q9SNB7STRING:3702.AT3G46610.1TAIR:AT3G46610TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.49645UniProt:Q9SNB7
Coordinates (TAIR10) chr3:-:17160224..17162221
Molecular Weight (calculated) 75179.00 Da
IEP (calculated) 7.40
GRAVY (calculated) -0.21
Length 665 amino acids
Sequence (TAIR10)
(BLAST)
001: MQALSILPLK SGLLVGSRLE FELDCSCFVV SPKTTRKRLC FLEQACFGSS SSISSFIFVS SNRKVLFLCE PKRSLLGSSF GVGWATEQRE LELGEEEVST
101: EDLSSANGGE KNNLRVDVRE LAFSLRAAKT ADDVDAVLKD KGELPLQVFC AMIKGFGKDK RLKPAVAVVD WLKRKKSESG GVIGPNLFIY NSLLGAMRGF
201: GEAEKILKDM EEEGIVPNIV TYNTLMVIYM EEGEFLKALG ILDLTKEKGF EPNPITYSTA LLVYRRMEDG MGALEFFVEL REKYAKREIG NDVGYDWEFE
301: FVKLENFIGR ICYQVMRRWL VKDDNWTTRV LKLLNAMDSA GVRPSREEHE RLIWACTREE HYIVGKELYK RIRERFSEIS LSVCNHLIWL MGKAKKWWAA
401: LEIYEDLLDE GPEPNNLSYE LVVSHFNILL SAASKRGIWR WGVRLLNKME DKGLKPQRRH WNAVLVACSK ASETTAAIQI FKAMVDNGEK PTVISYGALL
501: SALEKGKLYD EAFRVWNHMI KVGIEPNLYA YTTMASVLTG QQKFNLLDTL LKEMASKGIE PSVVTFNAVI SGCARNGLSG VAYEWFHRMK SENVEPNEIT
601: YEMLIEALAN DAKPRLAYEL HVKAQNEGLK LSSKPYDAVV KSAETYGATI DLNLLGPRPD KKNRP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)