AT3G46220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2042 (InterPro:IPR018611); Has 559 Blast hits to 533 proteins in 154 species: Archae - 3; Bacteria - 32; Metazoa - 305; Fungi - 42; Plants - 50; Viruses - 3; Other Eukaryotes - 124 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:16979174..16983970 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 89078.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.08 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||||||
| Length | 804 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDDELLELQR QFEFAQQVKS SVRLSDRNVV ELVQKLQELG VIDFDLLHTV TGKEYITQEQ LRNEITREIS KLGRVSVIDL ADTIGVDLYH VEKQAQDVVL 101: NDPGLMLVQG EIISQSYWDS IAEEINERLQ ECSQIAVAEL AGQLQVGSEL VQSVLEPRLG TLVKARLEGG QLYTPAYVER VTAMVRGASR GIFVPSNLSA 201: LWAPLQQLVQ ETNGASGVAV ENSFFQSIFN RLLKEEEMLG SLRAGTHWTP SAFATAQKEC VDSSFSQNSY ISYESMQKLG ISQAVQFLQS RYPDGTPLAA 301: VFIHSSMIEM LDSATEDAIE QNSWIDSLSV LPSSFTSQDA NKMLLLCPSV QSALKAEKAL ILGESYVLSS GFIKGIYDQI EKEADAFSIQ ASTATLIHPS 401: SKSSESTESI PANTDKGSKK KKGKSASTKA ATVETVPDDE EDARPKSKRN QKKGRDSSSS QKLDSKAGGK KESVKAQESN NIIPPDEWVM KKIVDSVPEF 501: EDDGTENPDS ILKHLADHMK PMLINSLKER RKKIFTENAD RMRRLIDDLQ KKLDESFLNM QLYEKALDLF EDDQSTAVVL HRHLLRTTAA TIADTLLHGL 601: DIHNKMKNGT EVEESKTQDL VLLDSSERTA LAKNLNGSLS KKALALVEAL EGKRVDTFMV TFRDLAEESG LVLKKLDKKL ERTLLHSYRK DLISQVSTES 701: DPIALLAKVV SLLFIKIHNK ALQAPGRAIA AAISHLKEKL DESAYKTLTD YQTATVTLLA LMSASSGEEH DCSADRILTK RELLESQMPL LRTLVLGDSQ 801: PQQS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)