AT3G43590.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc knuckle (CCHC-type) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: Zinc knuckle (CCHC-type) family protein (TAIR:AT3G43490.1); Has 22952 Blast hits to 17782 proteins in 462 species: Archae - 2; Bacteria - 65; Metazoa - 3265; Fungi - 1419; Plants - 1360; Viruses - 15440; Other Eukaryotes - 1401 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:15509753..15512255 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62571.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.65 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.30 | ||||||||||||||||||||||||||||||||||||
| Length | 551 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPRQNKDEKF VFDDGEDEDR EDPVAITEVD NGEEEDDDEA NEDLSLKILE KALSRRDVGN KLDSDLSSDS GVVSTVMVNG VKSKVKKSES SKKMKRNKLE 101: ADHEIPIVWN DQDEEKVVEE IVKGEGEDDE VERSDEPKTE ETASNLVLKK LLRGARYFDP PDAGWVSCYS CGEQGHTSFN CPTPTKRRKP CFICGSLEHG 201: AKQCSKGHDC YICKKTGHRA KDCPDKYKNG SKGAVCLRCG DFGHDMILCK YEYSKEDLKD VQCYICKSFG HLCCVEPGNS LSWAVSCYRC GQLGHSGLAC 301: GRHYEESNEN DSATPERLFN SREASECYRC GEEGHFAREC PNSSSISTSH GRESQTLCYR CNGSGHFARE CPNSSQVSKR DRETSTTSHK SRKKNKENSE 401: HDSTPHESNG KTKKKKKKKT HKEEQPQTSP RKRKHRGGWI TEEPEEESFQ RGKMRRPKSP ITPSGYNRSP STHIGHNYRS PKFNSGGHYP GSQSSRHHSG 501: PSPSRWQPSH QHHHHHQHLH HHHQNHSYEP APPRHGRANR YSEFAGNYER W |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)