AT3G27460.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SGF29 tudor-like domain | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SGF29 tudor-like domain; CONTAINS InterPro DOMAIN/s: SAGA-associated factor 29 (InterPro:IPR010750); BEST Arabidopsis thaliana protein match is: SGF29 tudor-like domain (TAIR:AT5G40550.2); Has 319 Blast hits to 319 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 112; Plants - 46; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:10159537..10161994 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30501.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.07 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||||||||||
| Length | 270 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSSPDIAGI LDNTKELDRL RKEQEEVLVE INKMHKKLQA TPEIVEKPGD ISLSKLKNLY IQAKELSESE VTVSNILLTQ LDSLLPSGPT GQQRRKLEGN 101: EQKRKRMKVD TDVTRVSPSM RNQIEAYASL KGEQVAARVT AEDAEKDEWF VVKVIHFDRE TKEVEVLDEE PGDDEEGGGQ RTYKLSMSCI LPFPKRNDPS 201: STQEFIPGKH VLAVYPGTTA LYKATVISTP RKRKSDEYLL EFDDDEEDGA LPQRTVPFHK VVALPEGHRQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)