AT3G25510.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.826 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : disease resistance protein (TIR-NBS-LRR class), putative | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: epidermis; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class) (TAIR:AT1G69550.1); Has 89074 Blast hits to 29960 proteins in 1009 species: Archae - 52; Bacteria - 3819; Metazoa - 7735; Fungi - 613; Plants - 72271; Viruses - 24; Other Eukaryotes - 4560 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:9260838..9268797 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 223585.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.96 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1981 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MNSSFFLGTL AAAIGFLTLL KKFKFQQDNR EDDSASLSPS SVPPSSLSRT WKHQVFPSFH GADVRKTFLS HVLEAFRGKG IDPFIDNSIE RSKSIGPELV 0101: EAIRGSRIAI VLLSRNYASS SWCMNELVEI MKCKEDLGQI VITIFYEVDP THIKKQTGDF GKVFKETCKG KTKEEIKRWR KALEGVATIA GYHSSNWDFE 0201: ALIGMGAHME NMRALLRLDL DDVRMIGIWG PPGIGKTTIA RFLLSQVSKS FQLSTIMVNI KECYPSPCLD EYSVQLQLQN KMLSKMINQK DIMIPHLGVA 0301: QERLKDKKVF LVLDDVDQLG QLDALAKETR WFGPGSRIII TTENLRLLMA HRINHIYKVE FSSTDEAFQI FCMHAFGQKH PYNGFYELSR EVTELAGGLP 0401: LGLKVMGSSL RGMSKQEWKR TLPRLRTCLD GKIESILMFS YEALSHEDKD LFLCIACFFN YQKIKKVEKH LADRFLDVRQ GLYVLAEKSL IHIGTGATEM 0501: HTLLVQLGRE IAHTQSTNDP RKSLFLVDER EICEALSDET MDSSRRIIGM DFDLSKNGEE VTNISEKGLQ RMSNLQFIRF DGRSCARHSS NLTVVRSSDN 0601: NCAHPDTVNA LQDLNYQFQE IRLLHWINFR RLCLPSTFNP EFLVELNMPS STCHTLWEGS KALRNLKWMD LSYSISLKEL PDLSTATNLE ELILKYCVSL 0701: VKVPSCVGKL GKLQVLCLHG CTSILELPSF TKNVTGLQSL DLNECSSLVE LPSSIGNAIN LQNLDLGCLR LLKLPLSIVK FTNLKKFILN GCSSLVELPF 0801: MGNATNLQNL DLGNCSSLVE LPSSIGNAIN LQNLDLSNCS SLVKLPSFIG NATNLEILDL RKCSSLVEIP TSIGHVTNLW RLDLSGCSSL VELPSSVGNI 0901: SELQVLNLHN CSNLVKLPSS FGHATNLWRL DLSGCSSLVE LPSSIGNITN LQELNLCNCS NLVKLPSSIG NLHLLFTLSL ARCQKLEALP SNINLKSLER 1001: LDLTDCSQFK SFPEISTNIE CLYLDGTAVE EVPSSIKSWS RLTVLHMSYF EKLKEFSHVL DIITWLEFGE DIQEVAPWIK EISRLHGLRL YKCRKLLSLP 1101: QLPESLSIIN AEGCESLETL DCSYNNPLSL LNFAKCFKLN QEARDFIIQI PTSNDAVLPG AEVPAYFTHR ATTGASLTIK LNERPISTSM RFKACIVLIK 1201: CDNDEAGDDG SSLMVHVDIM DKQNGLSVPY SPGIYTIYPL LTEHLYIFQG EAEESLQVDA YDDSFNEALM KEFQRKGITP FNDNEIKRGE SISPELVLAI 1301: RGSRIALILL SRNYASSSWC LDELAEIIKC REEFGQTVMV VFYKVDPSDI KKLTGDFGSV FRKTCAGKTN EDTRRWIQAL AKVATLAGYV SNNWDNEAVM 1401: IEKIATDISN KLNKSTPSRD FDELVGMGAH MERMELLLCL DSDEVRMIGI WGPSGIGKTT IARFLFSQFS DSFELSAFME NIKELMYRKP VCSDDYSAKL 1501: HLQNQFMSQI INHMDVEVPH LGVVENRLND KKVLIVLDNI DQSMQLDAIA KETRWFGHGS RIIITTQDQK LLKAHGINHI YKVDYPSTHE ACQIFCMSAV 1601: GKKFPKDEFQ ELALEVTNLL GNLPLGLRVM GSHFRGMSKQ EWINALPRLR THLDSNIQSI LKFSYDALCR EDKDLFLHIA CTFNNKRIEN VEAHLTHKFL 1701: DTKQRFHVLA EKSLISIEEG WIKMHNLLEL LGREIVCHEH ESIREPGKRQ FLVDARDICE VLTDDTGSKS VVGIYFNSAE LLGELNISER AFEGMSNLKF 1801: LRIKCDRSDK MYLPRGLKYI SRKLRLLEWD RFPLTCLPSN FCTEYLVELN MRHSKLVKLW EGNLSLGNLK WMNLFHSKNL KELPDFSTAT NLQTLILCGC 1901: SSLVELPYSI GSANNLQKLH LCRCTSLVEL PASIGNLHKL QNVTLKGCSK LEVVPTNINL ILDVKKYKNR ENRGLCSKKE I |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)