AT3G23370.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:8357613..8360792 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 89453.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.55 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||
| Length | 811 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAIARLLSPK STPQFNNRGF VILTRRWLSS SLEDGRKCER LSDSEASTNK DIGQKVVHWY SLGGLISNLK QKIMGNVILM DKSSGEDSVL PKSPMVSSSD 101: VAVTKVVTLK NVAESENCIH SSVKEEIGSE DASQSVAADN KICITSSIKE ESFVSEMGSQ DASQSVAVEN KNCISSSIKE ESSVSEMGSQ DASQSVAGIE 201: ACGKRESITV SNDRLGNINR LDGLESGQGK VLRSIRTERV DPSEEQSSKD VTLGFLTEEV SESQTSSRKN MGKLQPAKGL FDKVKPPQNS LSKLFVNSDP 301: YKEVKHPLRF ETLSNSNSSM STGESCSDAG DQHSLFGKML SDPVQEIKSI PNENDEHRLS DAPQNLSSLT SVLLRDWIDE QRSEDLAAIR ERKSIFSLES 401: SRNTVAPMAV GTMKKLMDSL NFPTDNGTDA EANSLNSNSR EEKWISEGNS AMQNSDRFCA IEEEEPQGET FVMETQSLCS QDTLDATTVN PKVTKKSFLA 501: LSAGEHSPNK VLLRFLPESS MKKHIVKAFS SQFGAVLHVQ EIPSIEGCIY KDALLTFETN TAVKKALKKG HVTVMNYNTV VEATSQEDMV ERICIPDLIG 601: DPDVPVALVK EPARTVKIHP LTHDFSSNQI KEALKFCRSN ISKFTLGSSR TDAFVEFETE DGKERALAEH SISICNTQLF ISRIDIPRTI VARISNLSKS 701: AMRDVRALCV PYGQIRGVYI RGTGVADVFF DISEWPNMLA ILNSMNGMEI DGKKLVVRPA TTVIPPEILR VLWKDPREKR YVKSVIQNLV REIEQPLDAT 801: RCHTLITELL L |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)