AT3G20340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. | ||||||||||||||||||||||||
| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 40 Blast hits to 40 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:7093075..7093422 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 13512.70 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.14 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.95 | ||||||||||||||||||||||||
| Length | 115 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGNCLRHESE MHWAGEDWDE FITEDEEDHH YSSKTTRDGK PVIVTRDSKS SVPSHEIKIR LTKKQLHDLL SKVNVHDLTF QQQTFSCPIL NNRGYEEANQ 101: QRLWRPVLQS IPEVN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)