AT3G19960.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.667 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : myosin 1 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of Myosin-like proteins | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
myosin 1 (ATM1); CONTAINS InterPro DOMAIN/s: Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G50360.1); Has 7421 Blast hits to 6650 proteins in 772 species: Archae - 0; Bacteria - 19; Metazoa - 4930; Fungi - 705; Plants - 652; Viruses - 1; Other Eukaryotes - 1114 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6949787..6956736 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 132462.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.23 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1176 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSQKVTPFMQ SLKSLPADYR FDGSPVSDRL ENSSGASVRL TNSNVPRKGG LRNGVSRTDT AAGDSEDSPY SGHGVFVEEQ SLTDDVDSGA ATMPLPQSDE 0101: RRWSDTSAYA RKKILQSWIQ LPNGNWELGK ILSTSGEESV ISLPEGKVIK VISETLVPAN PDILDGVDDL MQLSYLNEPS VLYNLNYRYN QDMIYTKAGP 0201: VLVAVNPFKE VPLYGNRYIE AYRKKSNESP HVYAIADTAI REMIRDEVNQ SIIIRCICIH ESMTYSISSS SGESGAGKTE TAKIAMQYLA ALGGGSGIEY 0301: EILKTNPILE AFGNAKTLRN DNSSRFGKLI EIHFSESGKI SGAQIQTFLL EKSRVVQCAE GERSYHIFYQ LCAGASPALR EKLNLTSAHE YKYLGQSNCY 0401: SINGVDDAER FHTVKEALDI VHVSKEDQES VFAMLAAVLW LGNVSFTVID NENHVEPVAD ESFLFHSLGS WCWKQECLLH NMCLSTVAKL IGCNINELTL 0501: TLSKRNMRVR NDTIVQKLTL PQAIDARDAL AKSIYSCLFD WLVEQINKSL AVGKRRTGRS ISILDIYGFE SFDKNSFEQF CINYANERLQ QHFNRHLFKL 0601: EQEEYIQDGI DWTRVDFEDN QNCLSLFEKK PLGLLSLLDE ESTFPNGTDL TLANKLKQHL QSNSCFRGDK GKLFTVVHYA GEVTYETTGF LEKNRDLLHS 0701: DSIQLLSSCS CLLPQAFASS MLIQSEKPVV GPLYKAGGAD SQRLSVATKF KSQLFQLMQR LGNTTPHFIR CIKPNNIQSP GVYEQGLVLQ QLRCCGVLEV 0801: LCKGPYKRFF IIAILHQFNI LPEMYQVGYT KLFFRTGQIG VLEDTRNRTL HGILRVQSSF RGYQARCLLK ELKRGISILQ SFVRGEKIRK EFAELRRRHK 0901: AAATIQSQVK SKIARIQYKG IADASVVIQS AIRGWLVRRC SGDIGWLKSG GAKTNELGEV LVKASVLSEL QRRVLKAEAA LREKEEENDI LQQRLQQYEN 1001: RWSEYETKMK SMEEIWQKQM RSLQSSLSIA KKSLAVEDSA RNSDASVNAS DATDWDSSSN QFRSQTSNGV GSRLQPMSAG LSVIGRLAEE FEQRAQVFGD 1101: DAKFLVEVKS GQVEANLDPD RELRRLKQMF ETWKKDYGGR LRETKLILSK LGSEESSGSM EKVKRKWWGR RNSTRY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)