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AT3G18910.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.985
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : EIN2 targeting protein2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EIN2 targeting protein2 (ETP2); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G19410.1); Has 1424 Blast hits to 1375 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1422; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:6757DNASU:821424EMBL:AK175224EMBL:AP000735
EMBL:BT012550EMBL:CP002686EnsemblPlants:AT3G18910EnsemblPlants:AT3G18910.1
entrez:821424GeneID:821424Genevisible:Q9LJ74Gramene:AT3G18910.1
hmmpanther:PTHR32133hmmpanther:PTHR32133:SF82HOGENOM:HOG000112505InParanoid:Q9LJ74
IntAct:Q9LJ74InterPro:IPR001810InterPro:IPR006527InterPro:IPR011043
InterPro:IPR017451iPTMnet:Q9LJ74KEGG:ath:AT3G18910OMA:ETSCISV
PaxDb:Q9LJ74Pfam:PF00646Pfam:PF07734Pfam:Q9LJ74
Pfscan:PS50181PhylomeDB:Q9LJ74PRIDE:Q9LJ74PRO:PR:Q9LJ74
PROSITE:PS50181ProteinModelPortal:Q9LJ74Proteomes:UP000006548RefSeq:NP_188521.1
SMART:SM00256SMR:Q9LJ74STRING:3702.AT3G18910.1SUPFAM:0047741
SUPFAM:SSF50965SUPFAM:SSF81383TAIR:AT3G18910tair10-symbols:ETP2
TIGRfam:TIGR01640TIGRFAMs:TIGR01640UniGene:At.8151UniProt:Q9LJ74
Coordinates (TAIR10) chr3:+:6521760..6522926
Molecular Weight (calculated) 44621.40 Da
IEP (calculated) 8.76
GRAVY (calculated) -0.35
Length 388 amino acids
Sequence (TAIR10)
(BLAST)
001: MKTIQEQLPN DLVEEILCRV PATSLRRLRS TCKAWNRLFK GDRILASKHF EKSAKQFRSL SLRNDYRIFP ISFNLHGNSP SLELKSELID PHSKNSAAPF
101: EISRVIHCEG LLLCSSQLDE SRVVVWNPLT GETRWIRTGD FRQKGRSFDV GYYYQKDKRS WIKSYKLLCY YRGTKYFEIY DFDSDSWRIL DDIIAPRGSI
201: GYSELSVSLK GNTYWFAKGV TEERPRTISL LKFDFYTEKS VPVLLPYQSR RLFQASSLSV VREDKLSVLL QLDQSSKTEI WVTNVIDETT KGAVSWTKVL
301: ALDLSPHLQI GNDGSFFLGE DKKVVMFCEK LIDENKVKDM VYIVGEDNVV TEVGFGVDEM DGCRAVILNY VPSLVQIERA GGNRKRGH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)