AT3G18020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: rna processing factor 2 (TAIR:AT1G62670.1); Has 37088 Blast hits to 10596 proteins in 228 species: Archae - 2; Bacteria - 22; Metazoa - 80; Fungi - 314; Plants - 35806; Viruses - 0; Other Eukaryotes - 864 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6165449..6167515 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77978.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.23 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||
| Length | 688 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFFVTRLRLR ARENGFFFSK SLSFSSASVL KSDDVEGEDD AIEAEDRRRS VTDRAYWRRR IHSICAVRRN PDEALRILDG LCLRGYRPDS LNLSSVIHSL 101: CDAGRFDEAH RRFLLFLASG FIPDERTCNV IIARLLYSRS PVSTLGVIHR LIGFKKEFVP SLTNYNRLMN QLCTIYRVID AHKLVFDMRN RGHLPDVVTF 201: TTLIGGYCEI RELEVAHKVF DEMRVCGIRP NSLTLSVLIG GFLKMRDVET GRKLMKELWE YMKNETDTSM KAAAFANLVD SMCREGYFND IFEIAENMSL 301: CESVNVEFAY GHMIDSLCRY RRNHGAARIV YIMKSKGLKP RRTSYNAIIH GLCKDGGCMR AYQLLEEGSE FEFFPSEYTY KLLMESLCKE LDTGKARNVL 401: ELMLRKEGAD RTRIYNIYLR GLCVMDNPTE ILNVLVSMLQ GDCRPDEYTL NTVINGLCKM GRVDDAMKVL DDMMTGKFCA PDAVTLNTVM CGLLAQGRAE 501: EALDVLNRVM PENKIKPGVV AYNAVIRGLF KLHKGDEAMS VFGQLEKASV TADSTTYAII IDGLCVTNKV DMAKKFWDDV IWPSGRHDAF VYAAFLKGLC 601: QSGYLSDACH FLYDLADSGA IPNVVCYNTV IAECSRSGLK REAYQILEEM RKNGQAPDAV TWRILDKLHD SMDLTVEREL ISNPATSG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)