AT3G15520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: cyclophilin 38 (TAIR:AT3G01480.1); Has 713 Blast hits to 711 proteins in 154 species: Archae - 5; Bacteria - 374; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 246 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:5249739..5252432 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50485.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.08 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 466 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASPLSSSTV VSHRLFFLHP SPLNRKFLFV KPKLPFNRTN SGDFRMRLHS TSSKTGTKEL IHSCNSSIDS KLNTFEAGSK NLEKLVATIL IFVQVWSPLP 101: LFGLDSAYIS PAEAVLYSPD TKVPRTGELA LRRAIPANPS MKIIQASLED ISYLLRIPQR KPYGTMESNV KKALKVAIDD KDKILASIPV DLKDKGSELY 201: TTLIDGKGGL QALITSIKKQ DPDKVSLGLA ASLDTVADLE LLQASGLSFL LPQQYLNYPR LAGRGTVEIT IEKADGSTFS AEAGGDQRKS ATVQIVIDGY 301: SAPLTAGNFA KLVTSGAYDG AKLNTVNQAV ITEDGSGKVE SVSVPLEVMP SGQFEPLYRT PLSVQDGELP VLPLSVYGAV AMAHSENSEE YSSPYQFFFY 401: LYDKRNSGLG GLSFDEGQFS VFGYTIAGKD ILGQIKTGDI IKSAKLIEGQ DRLSLPVQNN NINEST |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)