AT3G13065.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : STRUBBELIG-receptor family 4 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
STRUBBELIG-receptor family 4 (SRF4); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 5 (TAIR:AT1G78980.1); Has 161934 Blast hits to 117397 proteins in 3485 species: Archae - 127; Bacteria - 13410; Metazoa - 46563; Fungi - 8828; Plants - 74801; Viruses - 375; Other Eukaryotes - 17830 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:4187510..4190863 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74915.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.77 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 687 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGPNLQRIVL VFIACFGIFT SVVLAKTDSQ DVSALNDAYK SMNSPSKLKG WSSSGGDPCG DSWDGITCKG SSVTEIKVSG RGLSGSLGYQ LGNLKSLTYL 101: DVSKNNLNGN LPYQLPDKLT YLDGSENDFN GNVPYSVSLM NDLSYLNLGR NNLNGELSDM FQKLPKLETI DLSSNQLTGK LPQSFANLTG LKTLHLQENQ 201: FKGSINALRD LPQIDDVNVA NNQFTGWIPN ELKNIGNLET GGNKWSSGRA PSPPPGTRHI DRNSSGGGGG SSKALTLGVI IAVSSIGGLI LFAGLIALIS 301: RRKNSNDSSH FFDDEKGTNR SKPLFTPQSS QMLQFDNMEE FKNQKTVDSN TSLETKPSVK RTSSVSFKNS PTFHLIPSTQ VAATPDRSST SQDSPDTRGV 401: KAFSLADLQN TASCFSPNRL LGEGTIGRVY KAKFQDGRKF AVKEIDSSLL GKGNPEEFSH IVSSISSIHH KNMAELVGYC SEQGRNMLVY EYFTSGSLHR 501: FLHLSDDFSK PLTWNTRIRI ALGTAKAIEY LHETCSPPLV HKNIKSSNIL LDNELNPRLS DYGLANFHHR TSQNLGVGYN APECTDPSAY TQKSDVYSFG 601: VVMLELLTGR KPYDSGRPKA EQSLVRWAKP QLKDMDTLDE MVDPALCGLY APESVSSFAD IVSICVMTEP GLRPPVSNVV EALKRLV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)