AT3G12900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.719 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G55290.1); Has 8653 Blast hits to 8615 proteins in 1001 species: Archae - 0; Bacteria - 1126; Metazoa - 119; Fungi - 1049; Plants - 4930; Viruses - 0; Other Eukaryotes - 1429 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:4104576..4106112 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39718.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.14 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||||||
| Length | 357 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGINFEDQTT LFNFVVREGN GVKGMIDSGL SSVPRPFVQP LSERIPTQKA LTCEATQPID LSNLDGPQHK EVAKQIVEAA ETLGFFQVVN HGVSVELLEL 101: LKSSAHEFFA QAPEEKSMYL KEVSPSKLVK YGTSFVPDKE KAIEWKDYVS MLYTNDSEAL QHWPQPCREV ALEFLNSSME MVKNVVNILM ENVGVTLEEE 201: KMNGLMGTKM VNMNYYPTCP SPELTVGVGR HSDMGMLTVL LQDGIGGLYV KLDNGEWAEI PPVHGALVIN IGDTLQILSN GKYKSAEHRV RTTNIGSRVS 301: VPIFTAPNPS QKVGPLPEVV KRDGVARYKE FLFQDYMNNF FGQPHDGKKS LDFARAE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)