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AT3G11500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.969
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Small nuclear ribonucleoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Small nuclear ribonucleoprotein family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: probable small nuclear ribonucleoprotein G (TAIR:AT2G23930.1); Has 1287 Blast hits to 1287 proteins in 269 species: Archae - 120; Bacteria - 0; Metazoa - 486; Fungi - 285; Plants - 213; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).
Protein Annotations
DNASU:820323eggNOG:ENOG41122Q1eggNOG:KOG1780EMBL:AC008153
EMBL:AY062818EMBL:BT001203EMBL:CP002686EnsemblPlants:AT3G11500
EnsemblPlants:AT3G11500.1entrez:820323GeneID:820323GO:GO:0000398
GO:GO:0003723GO:GO:0005730GO:GO:0005732GO:GO:0019013
Gramene:AT3G11500.1hmmpanther:PTHR10553hmmpanther:PTHR10553:SF9HOGENOM:HOG000223546
InterPro:IPR001163InterPro:IPR010920InterPro:IPR017132KEGG:ath:AT3G11500
KO:K11099OMA:FINLVIDPfam:PF01423PhylomeDB:Q9CAX7
PIRSF:PIRSF037188Proteomes:UP000006548Reactome:R-ATH-72163Reactome:R-ATH-72165
RefSeq:NP_187757.1SMART:SM00651SMR:Q9CAX7STRING:3702.AT3G11500.1
SUPFAM:SSF50182TAIR:AT3G11500UniGene:At.27222UniProt:Q9CAX7
Coordinates (TAIR10) chr3:-:3621626..3622474
Molecular Weight (calculated) 8751.70 Da
IEP (calculated) 9.13
GRAVY (calculated) -0.27
Length 79 amino acids
Sequence (TAIR10)
(BLAST)
1: MSRSGQPPDL KKYMDKKLQI KLNANRMVVG TLRGFDQFMN LVVDNTVEVN GDDKTDIGMV VIRGNSIVTV EALEPVGRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)