AT3G10810.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.987 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc finger (C3HC4-type RING finger) family protein | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc finger (C3HC4-type RING finger) family protein; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G56590.1); Has 18036 Blast hits to 9011 proteins in 812 species: Archae - 58; Bacteria - 3529; Metazoa - 8497; Fungi - 1587; Plants - 1132; Viruses - 68; Other Eukaryotes - 3165 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:3381848..3384227 | ||||||||||||||||||||
| Molecular Weight (calculated) | 54637.30 Da | ||||||||||||||||||||
| IEP (calculated) | 9.41 | ||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||
| Length | 496 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKTEDDVSL RVAGGEATGD STVRNARCGC CKWISSFVGF KCLFVLLLSV ALFLSALFLL LPFPMDREDS NLDPRFRGHA IVASFSINRS ASFLNENTLQ 101: LQNDIFQEMS YISIKVTILA VEPSDELNIT KVVFGIDPDT GYREILPLSL SSIKEMFESV LINQSTLQLT KSLFGETFLF EVLKFPGGIT VIPPQSAFPL 201: QKFKIVFNFT LNYSIHQIQI NFNTLASQLK NGLNLAPYEN LYVSLSNSEG STVSPPTTVH SSVLLRVGTS NSSPRLKQLT DTITGSRSKN LGLNNTIFGK 301: VKQVRLSSFL PNSSDSSTKS PSPSPSPHSK HHHHHHHHHH HHHHHHHNHH HHHHHNLSPK MAPEVSPVAS PAPHRSRKRA PSAPPPCNPG NRVHFKEKRV 401: QFSSTPAPAP SAGAPHHQLH SPAPISAAKS HIVPISAPLP HVVFAHAAQP PITEPREPHA NEVAHPQPQS SSSAIEVLPA MPWIVLLMLI VAWLHE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)