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AT3G09230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb domain protein 1
Curator
Summary (TAIR10)
member of MYB3R- and R2R3- type MYB- encoding genes
Computational
Description (TAIR10)
myb domain protein 1 (MYB1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 109 (TAIR:AT3G55730.1); Has 8868 Blast hits to 7976 proteins in 477 species: Archae - 0; Bacteria - 0; Metazoa - 777; Fungi - 540; Plants - 5565; Viruses - 3; Other Eukaryotes - 1983 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AC011436EMBL:AY550295
EMBL:BT026429EMBL:CP002686EMBL:D10936EnsemblPlants:AT3G09230
EnsemblPlants:AT3G09230.1entrez:820079Gene3D:1.10.10.60GeneID:820079
GO:GO:0003677GO:GO:0003700GO:GO:0006355GO:GO:0009751
Gramene:AT3G09230.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF524HOGENOM:HOG000238469
InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT3G09230
KO:K09422OMA:FTEVEDQPfam:PF00249Pfscan:PS51294
PhylomeDB:Q42575PIR:S22520PROSITE:PS51294Proteomes:UP000006548
RefSeq:NP_187534.1SMART:SM00717SMR:Q42575STRING:3702.AT3G09230.1
SUPFAM:SSF46689TAIR:AT3G09230tair10-symbols:AtMYB1tair10-symbols:MYB1
UniGene:At.50162UniProt:Q42575
Coordinates (TAIR10) chr3:+:2833460..2835134
Molecular Weight (calculated) 42813.80 Da
IEP (calculated) 5.22
GRAVY (calculated) -0.59
Length 393 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAEIVRRSE VTGLRREVEE SSIGRGDCDG DGGDVGEDAA GFVGTSGRGR RDRVKGPWSK EEDDVLSELV KRLGARNWSF IARSIPGRSG KSCRLRWCNQ
101: LNPNLIRNSF TEVEDQAIIA AHAIHGNKWA VIAKLLPGRT DNAIKNHWNS ALRRRFIDFE KAKNIGTGSL VVDDSGFDRT TTVASSEETL SSGGGCHVTT
201: PIVSPEGKEA TTSMEMSEEQ CVEKTNGEGI SRQDDKDPPT LFRPVPRLSS FNACNHMEGS PSPHIQDQNQ LQSSKQDAAM LRLLEGAYSE RFVPQTCGGG
301: CCSNNPDGSF QQESLLGPEF VDYLDSPTFP SSELAAIATE IGSLAWLRSG LESSSVRVME DAVGRLRPQG SRGHRDHYLV SEQGTNITNV LST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)