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AT3G09160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.883
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G03480.1); Has 148 Blast hits to 123 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
EMBL:CP002686EnsemblPlants:AT3G09160EnsemblPlants:AT3G09160.1entrez:820071
Gene3D:3.30.70.330GeneID:820071GO:GO:0000166GO:GO:0003676
Gramene:AT3G09160.1InParanoid:F4IZU8InterPro:IPR000504InterPro:IPR012677
KEGG:ath:AT3G09160PaxDb:F4IZU8Pfam:PF00076Pfscan:PS50102
PROSITE:PS50102ProteinModelPortal:F4IZU8Proteomes:UP000006548RefSeq:NP_187528.2
SMR:F4IZU8SUPFAM:SSF54928TAIR:AT3G09160UniGene:At.53226
UniProt:F4IZU8
Coordinates (TAIR10) chr3:-:2806262..2806912
Molecular Weight (calculated) 14748.20 Da
IEP (calculated) 4.26
GRAVY (calculated) -0.46
Length 132 amino acids
Sequence (TAIR10)
(BLAST)
001: MDEIANKGLE VKRSRKIRDS DIERISVTGY DIELPREHVE SELKKLFSPC GEITDVHIPE TRNSSLWSHA FIYFVGEGTA DKALQLNGSD MGGWTVDAEA
101: DPFPKEEDNC VELEVEGYDT TLRLVSLISS AS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)