AT3G04980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNAJ heat shock N-terminal domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT5G27240.1); Has 24150 Blast hits to 22364 proteins in 3226 species: Archae - 156; Bacteria - 8554; Metazoa - 5064; Fungi - 2027; Plants - 2674; Viruses - 40; Other Eukaryotes - 5635 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1378684..1382181 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 129910.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.73 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.87 | ||||||||||||||||||||||||||||||||
| Length | 1165 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEAGDFVGAH KFVTKAQRLF PNLENIVQMM TICDVHSSAI KKIKGLDDWY GVLQVQPYAD ADTIKKQYRK LALLLHPDKN KFAGAEAAFK LVGEANRLLS 0101: DQIKRSQYDN RYRSHSMFAN RHVNVYSGRH CAATNNAAEN IAGVFTFWTR CRHCGQCYKY LREYMNTSMH CSSCQKSFVA CKMRCDGVPP SSSTAGRKEF 0201: QDQVMSNTSR QNASTAAESG SSAADMGKNG KVGGKVNKKN QEKQKNGAVN RGTKKEEGCT ENDAEGRKPQ TSETGTNISA EMPKADVLKP QHQVKEEPDT 0301: SAEKSIPDLS APQKNRAPKK KRKVVEESSK SFEVDSSDTA GAKTDTNEHN KRKSSRKKPQ VSYAKEGSDG DFVSPPNKKT KSGFEFESEP NKKQTAEDNK 0401: SPKLAVSGVS SASSHSYKGK AKKNAHSGNE DNLSAKNKVS EGCDGNGEDA ALLSKIGRVE KGYKANENSN PLDIPDLEFS VFKVERKTED FAVNQVWSTT 0501: TDCRDGMPRK YARVKKVLNG EFKLRITYLD PVLDKTDESI PVACGKFKNG KTMEVKDSSI FSGQMHHLRC NNIVSIYPRK GEIWAIFREW EEEWNTSLKK 0601: HKFPYKYDFV EIVSDFHDLN GVGVAYLGKL KGSVQLFHWE PQHGICQIQC SPKDMLRFSH KVPAVKMTGK EKESVPPNSY ELDPAALPKD IFQVDAVDME 0701: MDSEILKGKA DGPYKVGAKA KAVQETASSP RKRQKSDDDN DDGVCSNLGE VIGGSNRSHI FSSCEVDDKN TSTKSRKDGE STDVFRLRKS PRLQTIPNHQ 0801: GDEKKSAKQG NKMNTPKKMD KGLVTDSLGV DEKKTSKSRK NGEATDVFKL RKSPRLQTIP SQQGDEMKST KQGNKMNTPK KTDKGLETDS LGVRKSPNGI 0901: HQPAESQEGE SSKKQGCNGE IPSLSKQNDL PTQLGGSTYK SPRTTHVSPH CKTPRRNAFD FQNLRSEDKF EVNQIWAIYS NDNGMPLEYV KIKKIETKPK 1001: FVLRGTPTEL YPPSTEPVTR TVSCGEFKLL KGRPKIIPHA SFSHLVKPFD SSKRFRFKVY PRKGEIWALY KNCDSTEEPD IVEVVEDNCD GEIVKVVALT 1101: AMGSSFQRKQ GSDVGLIDIS KAEMSRFSHQ IPAIRHPKKT TRLVKGGYYW ELDPIAIPSR TIVID |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)