AT3G03950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : evolutionarily conserved C-terminal region 1 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Physically interacts with CIPK1. Located in the nucleus. | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
evolutionarily conserved C-terminal region 1 (ECT1); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 3 (TAIR:AT5G61020.1); Has 965 Blast hits to 955 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 418; Fungi - 123; Plants - 338; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:1021502..1023767 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47946.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.42 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||
| Length | 425 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGAASSDRL VTSFPLLDLF QDLSLGSDAN EVPMNFTKGS FQHPYGHAPY GASSHGSERR PNMNAGNLLN GGDSIGSYPW GYIPANYPSG GYPDPRFGYD 101: RNSNHSSFSH LMNPHSSQEV PSFDQLGYND HLYSNHGLYG LYGNVIDSGH AYGTFGYDSW KLGRGWYPVD GYRKTRSFNH GRGYSDEKAD RLNELCRGPR 201: SSDFKNPQVL NSSMLDAMKQ DVSAVDLQRY NGENFPESFV KAKFFVIKSY SEDDVHNCIK YGAWSSTPTG NKKLNAAYYE AKENSQECPV YLLFSVNASG 301: QFVGLAEMVG PVDFNKTMEY WQQDKWIGCF PVKWHIIKDI PNSLLRHITL ANNENKPVTN SRDTQEVNLE HGTKIIKIFK EYMSKTCILD DYKFYETRQK 401: IIRDKKIKQK KQALDGASGE TINLS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)