AT3G02930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.993 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF827) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant protein of unknown function (DUF827); LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT5G16730.1); Has 245110 Blast hits to 119184 proteins in 3857 species: Archae - 3264; Bacteria - 55991; Metazoa - 95493; Fungi - 19215; Plants - 14009; Viruses - 1145; Other Eukaryotes - 55993 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:655306..658319 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 91864.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.75 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.95 | ||||||||||||||||||||||||||||||||
| Length | 806 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASKIKNGLS DTTLRKSSST SLRVPRLTRI VTKPDSNSPS PTQQQSRLSF ERPSSNSKPS TDKRSPKAPT PPEKTQIRAV RVSESQPQSV QIKEDLKKAN 101: ELIASLENEK AKALDQLKEA RKEAEEASEK LDEALEAQKK SLENFEIEKF EVVEAGIEAV QRKEEELKKE LENVKNQHAS ESATLLLVTQ ELENVNQELA 201: NAKDAKSKAL CRADDASKMA AIHAEKVEIL SSELIRLKAL LDSTREKEII SKNEIALKLG AEIVDLKRDL ENARSLEAKV KELEMIIEQL NVDLEAAKMA 301: ESYAHGFADE WQNKAKELEK RLEEANKLEK CASVSLVSVT KQLEVSNSRL HDMESEITDL KEKIELLEMT VASQKVDLEK SEQKLGIAEE ESSKSEKEAE 401: KLKNELETVN EEKTQALKKE QDATSSVQRL LEEKKKILSE LESSKEEEEK SKKAMESLAS ALHEVSSESR ELKEKLLSRG DQNYETQIED LKLVIKATNN 501: KYENMLDEAR HEIDVLVNAV EQTKKQFESA MVDWEMREAG LVNHVKEFDE EVSSMGKEMN RLGNLVKRTK EEADASWEKE SQMRDCLKEV EDEVIYLQET 601: LREAKAETLK LKGKMLDKET EFQSIVHEND ELRVKQDDSL KKIKELSELL EEALAKKHIE ENGELSESEK DYDLLPKVVE FSEENGYRSA EEKSSKVETL 701: DGMNMKLEED TEKKEKKERS PEDETVEVEF KMWESCQIEK KEVFHKESAK EEEEDLNVVD QSQKTSPVNG LTGEDELLKE KEKKKKKTLF GKVGNLLKKK 801: GPVNQK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)