AT2G46320.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.572 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Mitochondrial substrate carrier family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding, transporter activity; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: manganese tracking factor for mitochondrial SOD2 (TAIR:AT4G27940.1); Has 17946 Blast hits to 11927 proteins in 409 species: Archae - 0; Bacteria - 2; Metazoa - 7501; Fungi - 5171; Plants - 3608; Viruses - 0; Other Eukaryotes - 1664 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:19015998..19018020 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39160.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.63 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||||||
| Length | 361 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVEEAQLDPK SKSIPNENLK FGERALSAGG AAFISAVIVN PLDVVKTRLQ AQAAGVPYQG SCRLGCFDTN STLVHDLRSN SAPGMCRITG SASVCSDNQY 101: KGTLDVFYKI IRQEGFSRLW RGTNASLTLA IPTVGIYMPC YDYFRNIMEE FTTEKSPSLT VYVPLVAGTI ARSLACISCY PVELARTRMQ AFKGTQRNVK 201: LPGVWKTLVD VVNPVKGSNN GYRMLWTGLG AQLARDVPFS AICWSILEPT RRSIQSAMGE EPRAGSIIGA NFAAGFVAGA VAAAATCPLD VAKTRRQIEK 301: NTDRAMTMTT RQTLAEIWRD GGMRGMFSGA GARVGRAGPS VAIVVSFYEV VKYGLHNFHQ Q |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)