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AT2G43110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 212 Blast hits to 211 proteins in 96 species: Archae - 0; Bacteria - 6; Metazoa - 62; Fungi - 91; Plants - 31; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPW6eggNOG:KOG3089EMBL:AK118957EMBL:BT028905
EMBL:CP002685EnsemblPlants:AT2G43110EnsemblPlants:AT2G43110.1entrez:818913
Gene3D:3.40.50.300GeneID:818913Gramene:AT2G43110.1hmmpanther:PTHR24030
HOGENOM:HOG000240728InterPro:IPR027417InterPro:IPR032704KEGG:ath:AT2G43110
ncoils:CoilOMA:SWKEELCPANTHER:PTHR24030Pfam:PF14617
PhylomeDB:Q8GWB4PIR:B84862Proteomes:UP000006548RefSeq:NP_850384.1
STRING:3702.AT2G43110.1TAIR:AT2G43110UniGene:At.44268UniProt:Q8GWB4
Coordinates (TAIR10) chr2:+:17922067..17924291
Molecular Weight (calculated) 32572.50 Da
IEP (calculated) 10.15
GRAVY (calculated) -0.66
Length 288 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTELKPSA VKNPKRNRRP SHGPKKDLKK KKTKITKKTK KSKAPTFDKT IEKSRSNDQK TDNDEDEQLY SEPVSASEQL NYFLNHLDSA IGIKVSSLEL
101: EPIKDTCIVE LSQGLDQDVS NLGEHIKLSC GSSWRETLCE GESLERKVEP GNPSVLVISS SALRSLELLR GLHSLTKQCP AVKLFSKHLK VEEQVSLLKK
201: RVNIGSGTPN RIKKLVDIEA LGLSRLDMIV IDMHPDVKGF SLFTLPQVRD EFWDLYKNCF HQRVLEGRLR ICMYGPKPSP NLKKKNKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)