AT2G42030.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/U-box superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G58030.4); Has 5667 Blast hits to 5631 proteins in 406 species: Archae - 0; Bacteria - 6; Metazoa - 3361; Fungi - 638; Plants - 1015; Viruses - 19; Other Eukaryotes - 628 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:17539069..17540346 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47430.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.20 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||||||||||
| Length | 425 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGEEISSTVN LDLNLGPDPE LGLEPATNYA RSDWGNGLAA RESESLRRFR SRYRSRFRRI DMLPVLAETH SPAMELSQLL ITSGNVVALP AGEGSMASGE 101: RVIEDSKKCE NGSKVMAEDN VTEEKRDVEK SVGSDGSFFD CYICLDLSKD PVVTNCGHLY CWSCLYQWLQ VSEAKECPVC KGEVSVKTVT PIYGRGIQKR 201: ESEEVSNTKI PSRPQARRTE SLRTTLNRSG HIPTEIFRHL QDRLERESST GERRARPSLN RFMTSRGVRA EENQSSEALV EPSSDEINDI DLILNNAPEN 301: EEENENLSSS RALATQRRWA QMYGRVSSFT LSSAERLADT YLITHALGRN QEQNSSPPVG VEDRDSFSSI VGVINSESQV ETAAEINSML TVSTSSSVRR 401: HENSSRVSDV DSADSRPLRR RRRLA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)