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AT2G41475.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.966
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid
  • PMID:21533090 (2011): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Embryo-specific protein 3, (ATS3)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Embryo-specific protein 3, (ATS3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Embryo-specific 3 (InterPro:IPR010417); BEST Arabidopsis thaliana protein match is: Embryo-specific protein 3, (ATS3) (TAIR:AT5G62200.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0EHeggNOG:ENOG410YRBBEMBL:AK175164EMBL:AK175615
EMBL:AK175765EMBL:AK221826EMBL:AK221888EMBL:AK228257
EMBL:CP002685EnsemblPlants:AT2G41475EnsemblPlants:AT2G41475.1entrez:6240499
Gene3D:2.60.60.20GeneID:6240499GO:GO:0009506Gramene:AT2G41475.1
hmmpanther:PTHR31718hmmpanther:PTHR31718:SF6InterPro:IPR001024InterPro:IPR010417
KEGG:ath:AT2G41475OMA:VCYLYLLPfam:PF06232PhylomeDB:Q681K2
Proteomes:UP000006548RefSeq:NP_001118501.1SUPFAM:SSF49723TAIR:AT2G41475
UniGene:At.43627UniProt:Q681K2
Coordinates (TAIR10) chr2:-:17295259..17296329
Molecular Weight (calculated) 19949.90 Da
IEP (calculated) 9.00
GRAVY (calculated) 0.03
Length 179 amino acids
Sequence (TAIR10)
(BLAST)
001: MLRLAIPLFL FALCSFTLFS SARSFITTKP LPIDSFIPKP KLENAAACSY TVIIKTSCSS VSYTRDKISI SFGDVYGNEV YVKRLDDPSS RTFEKCSSDT
101: YKISGPCMRD VCYLYLLRQG SDGWKPENVK IYGSSIRSVT FYYNLFLPNS VWYGFNVCNG IGNTKSSQPI STTSSVAAM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)