AT2G37570.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HSP20-like chaperones superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a protein that can complement the salt-sensitive phenotype of a calcineurin (CaN)-deficient yeast mutant. This gene occurs in a single-copy and is 75% identical to tobacco SLT1 gene. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
sodium- and lithium-tolerant 1 (SLT1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: hyperosmotic salinity response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT5G02480.1); Has 106 Blast hits to 104 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:15761466..15762950 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55827.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.37 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||
| Length | 494 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MENHHPSTLL SMDSSASSHE ELDLEMNNNR QSLLSGPPDI NLPLSAERSP PPPPWNLDAC DILDVGLGSQ AYETENYMSV VPKVGRKCAK RVDSIWGAWF 101: FFSFYFKPAL NEKSKAKIVR DSNGISGFDK SDLKLDVFLV QHDMENMYMW VFKERPENAL GKMQLRSYMN GHSRQGDRLF PFSVEKGFVR SHRMQRKHYR 201: GLSNPQCVHG IELVPLPNLT CLDEEERKRW MELTGRDLNF TIPPEASDFG SWRNLPNTDF ELERPTPSLK NPTANHSKKL LNGSGLNLST QPSNHSNGEA 301: TDLSPSSHKK RKDLFSNGIH EEECCLTVNP QPPVIEAHQN ELPTWSNEFT GAMKNVYGPV TAAKTIYEDE EGYLIIISLP FVDLNSVKVS WRNTLTHGII 401: KVSCLSTSRV PFIKRHDRTF KLTDSASEHC PPGEFVREIP LSNRIPEDAN IEAYYDGPGS VLEILVPKLR AGPEEHEVRV CLRPNLGGND LMLT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)