AT2G35100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 ASURE: golgi What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Exostosin family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Putative glycosyltransferase, similar to other CAZy Family 47 proteins. The protein is predicted to be a type 2 membrane protein with a signal anchor and is predicted to be targeted to the secretory pathway and to have a single transmembrane helix near the N terminus; hence, the protein has the features expected for a type II membrane protein targeted to the Golgi vesicles. The gene was shown to be expressed in all tissues but particularly in vascular tissues of leaves and stems. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ARABINAN DEFICIENT 1 (ARAD1); FUNCTIONS IN: transferase activity, transferring glycosyl groups, catalytic activity; INVOLVED IN: pectin biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT5G44930.2); Has 1290 Blast hits to 1285 proteins in 106 species: Archae - 0; Bacteria - 8; Metazoa - 193; Fungi - 4; Plants - 1016; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:14793993..14795564 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50785.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.32 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 447 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MARKSSLLKR AAIAVVSVIA IYVILNASVS RSLPSSSDLP RQLIREDDDD EGRAPIQPRV RVYMYNLPKR FTYGLIEQHS IARGGIKKPV GDVTTLKYPG 101: HQHMHEWYLF SDLNQPEVDR SGSPIVRVSD PADADLFYVP VFSSLSLIVN AGRPVEAGSG YSDEKMQEGL VEWLEGQEWW RRNAGRDHVI PAGDPNALYR 201: ILDRVKNAVL LVSDFGRLRP DQGSFVKDVV IPYSHRVNLF NGEIGVEDRN TLLFFMGNRY RKDGGKVRDL LFQVLEKEDD VTIKHGTQSR ENRRAATKGM 301: HTSKFCLNPA GDTPSACRLF DSIVSLCVPL IVSDSIELPF EDVIDYRKFS IFVEANAALQ PGFLVQMLRK IKTKKILEYQ REMKSVRRYF DYDNPNGAVK 401: EIWRQVSHKL PLIKLMSNRD RRLVLRNLTE PNCSCLCTNQ TGLITSI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)